Information for 6-CCGGCCSCGC (Motif 5)


Reverse Opposite:

p-value:1e-28
log p-value:-6.510e+01
Information Content per bp:1.797
Number of Target Sequences with motif133.0
Percentage of Target Sequences with motif4.43%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets37.9 +/- 20.2bp
Average Position of motif in Background66.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SUT1/SUT1_YPD/[](Harbison)/Yeast

Match Rank:1
Score:0.86
Offset:0
Orientation:reverse strand
Alignment:CCGGCCSCGC
CCGGCCCCGC

PB0010.1_Egr1_1/Jaspar

Match Rank:2
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-CCGGCCSCGC---
TCCGCCCCCGCATT

RAP2-6/MA1052.1/Jaspar

Match Rank:3
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:CCGGCCSCGC
--GGCGGCGC

RAP2-10/MA0980.1/Jaspar

Match Rank:4
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:CCGGCCSCGC
--GGCGGCGC

ERF109/MA1053.1/Jaspar

Match Rank:5
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:CCGGCCSCGC
--GGCGGCGC

RDS1/MA0361.1/Jaspar

Match Rank:6
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CCGGCCSCGC
NCGGCCG---

Os05g0497200/MA1034.1/Jaspar

Match Rank:7
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CCGGCCSCGC
-CGGCGGCG-

EGR3/MA0732.1/Jaspar

Match Rank:8
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--CCGGCCSCGC---
CTACGCCCACGCACT

EGR1/MA0162.2/Jaspar

Match Rank:9
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---CCGGCCSCGC-
CCCCCGCCCCCGCC

RDS1(MacIsaac)/Yeast

Match Rank:10
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CCGGCCSCGC
-CGGCCG---