Information for 11-CGGCGGTT (Motif 10)


Reverse Opposite:

p-value:1e-29
log p-value:-6.865e+01
Information Content per bp:1.823
Number of Target Sequences with motif130.0
Percentage of Target Sequences with motif11.56%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets41.0 +/- 18.8bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:1
Score:0.81
Offset:1
Orientation:forward strand
Alignment:CGGCGGTT-
-GGCVGTTR

Run/dmmpmm(Papatsenko)/fly

Match Rank:2
Score:0.80
Offset:1
Orientation:forward strand
Alignment:CGGCGGTT
-GGCGGTG

Gam1/MA0034.1/Jaspar

Match Rank:3
Score:0.80
Offset:1
Orientation:reverse strand
Alignment:CGGCGGTT---
-GGCGGTTGTC

ERF4/MA0992.1/Jaspar

Match Rank:4
Score:0.78
Offset:-2
Orientation:reverse strand
Alignment:--CGGCGGTT
GGCGGCGG--

GAMYB(MYB)/Hordeum vulgare/AthaMap

Match Rank:5
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:CGGCGGTT-
-GGCGGTTG

ERF069/MA0997.1/Jaspar

Match Rank:6
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---CGGCGGTT
NGGCGGCGN--

ERF11/MA1001.1/Jaspar

Match Rank:7
Score:0.76
Offset:-4
Orientation:reverse strand
Alignment:----CGGCGGTT
NTGNCGGCGN--

ABI4(1)(AP2/EREBP)/Zea mays/AthaMap

Match Rank:8
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--CGGCGGTT
NGGGGCGGTG

IME1(MacIsaac)/Yeast

Match Rank:9
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--CGGCGGTT
CTCGGCGG--

UME6(MacIsaac)/Yeast

Match Rank:10
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-CGGCGGTT-
TCGGCGGCTA