Information for 21-GWGACAAT (Motif 15)


Reverse Opposite:

p-value:1e-11
log p-value:-2.729e+01
Information Content per bp:1.720
Number of Target Sequences with motif114.0
Percentage of Target Sequences with motif10.13%
Number of Background Sequences with motif16.6
Percentage of Background Sequences with motif2.25%
Average Position of motif in Targets39.6 +/- 20.0bp
Average Position of motif in Background29.7 +/- 11.3bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17/MA0078.1/Jaspar

Match Rank:1
Score:0.93
Offset:2
Orientation:reverse strand
Alignment:GWGACAAT---
--GACAATGNN

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:2
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:GWGACAAT--
RNAACAATGG

MF0011.1_HMG_class/Jaspar

Match Rank:3
Score:0.88
Offset:2
Orientation:reverse strand
Alignment:GWGACAAT
--AACAAT

SRY/MA0084.1/Jaspar

Match Rank:4
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-GWGACAAT
GTAAACAAT

PB0183.1_Sry_2/Jaspar

Match Rank:5
Score:0.86
Offset:-4
Orientation:forward strand
Alignment:----GWGACAAT-----
TCACGGAACAATAGGTG

Sox5/MA0087.1/Jaspar

Match Rank:6
Score:0.86
Offset:1
Orientation:reverse strand
Alignment:GWGACAAT
-NAACAAT

PB0168.1_Sox14_2/Jaspar

Match Rank:7
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--GWGACAAT-----
CTCACACAATGGCGC

PB0070.1_Sox30_1/Jaspar

Match Rank:8
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--GWGACAAT------
AATGAACAATGGAATT

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:9
Score:0.84
Offset:1
Orientation:forward strand
Alignment:GWGACAAT---
-RAACAATGGN

PB0165.1_Sox11_2/Jaspar

Match Rank:10
Score:0.83
Offset:-3
Orientation:reverse strand
Alignment:---GWGACAAT---
NNCNNAACAATTNT