Information for 2-CCCTGCCG (Motif 2)


Reverse Opposite:

p-value:1e-51
log p-value:-1.187e+02
Information Content per bp:1.627
Number of Target Sequences with motif357.0
Percentage of Target Sequences with motif31.73%
Number of Background Sequences with motif34.6
Percentage of Background Sequences with motif4.69%
Average Position of motif in Targets37.8 +/- 20.5bp
Average Position of motif in Background41.7 +/- 28.8bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PHD1/PHD1_BUT90/8-SUT1(Harbison)/Yeast

Match Rank:1
Score:0.83
Offset:1
Orientation:reverse strand
Alignment:CCCTGCCG-
-CCTGCGGC

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--CCCTGCCG--
CCCCCTGCTGTG

SOK2/SOK2_BUT14/4-SUT1(Harbison)/Yeast

Match Rank:3
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-CCCTGCCG
TNCCTGCA-

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CCCTGCCG---
-CCTGCTGAGH

grh/dmmpmm(Papatsenko)/fly

Match Rank:5
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CCCTGCCG
TACCTGCT-

RDS1/MA0361.1/Jaspar

Match Rank:6
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CCCTGCCG
-NCGGCCG

PB0205.1_Zic1_2/Jaspar

Match Rank:7
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CCCTGCCG-----
TNTCCTGCTGTGNNG

RDS1(MacIsaac)/Yeast

Match Rank:8
Score:0.68
Offset:2
Orientation:forward strand
Alignment:CCCTGCCG
--CGGCCG

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CCCTGCCG-----
TCNCCTGCTGNGNNN

opa/dmmpmm(Noyes)/fly

Match Rank:10
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----CCCTGCCG
GACCCCCCGCTG