Information for 2-CGCSGCSCBG (Motif 3)


Reverse Opposite:

p-value:1e-48
log p-value:-1.115e+02
Information Content per bp:1.792
Number of Target Sequences with motif205.0
Percentage of Target Sequences with motif18.22%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets40.0 +/- 18.9bp
Average Position of motif in Background31.3 +/- 9.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RAP2-10/MA0980.1/Jaspar

Match Rank:1
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:CGCSGCSCBG
GGCGGCGC--

RAP2-6/MA1052.1/Jaspar

Match Rank:2
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:CGCSGCSCBG
GGCGGCGC--

ERF109/MA1053.1/Jaspar

Match Rank:3
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:CGCSGCSCBG
GGCGGCGC--

STP1(MacIsaac)/Yeast

Match Rank:4
Score:0.73
Offset:0
Orientation:forward strand
Alignment:CGCSGCSCBG
TGCGGCGC--

CRF4/MA0976.1/Jaspar

Match Rank:5
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:CGCSGCSCBG
GGCGGCGC--

RAP2-3/MA1051.1/Jaspar

Match Rank:6
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:CGCSGCSCBG
GGCGGCGC--

STP2/MA0395.1/Jaspar

Match Rank:7
Score:0.72
Offset:-6
Orientation:reverse strand
Alignment:------CGCSGCSCBG----
NNGNNGTGCGGCGCCGNTNN

STP1/MA0394.1/Jaspar

Match Rank:8
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CGCSGCSCBG
TGCGGCGC--

CRF2/MA0975.1/Jaspar

Match Rank:9
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CGCSGCSCBG
GGCGGCGG--

ERF069/MA0997.1/Jaspar

Match Rank:10
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CGCSGCSCBG
NGGCGGCGN--