Information for 4-SCTTTGYT (Motif 6)


Reverse Opposite:

p-value:1e-39
log p-value:-9.035e+01
Information Content per bp:1.593
Number of Target Sequences with motif536.0
Percentage of Target Sequences with motif47.64%
Number of Background Sequences with motif136.0
Percentage of Background Sequences with motif18.44%
Average Position of motif in Targets35.9 +/- 20.3bp
Average Position of motif in Background34.6 +/- 18.2bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.43
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:1
Score:0.87
Offset:0
Orientation:forward strand
Alignment:SCTTTGYT--
CCWTTGTYYB

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:2
Score:0.86
Offset:0
Orientation:forward strand
Alignment:SCTTTGYT--
YCTTTGTTCC

Sox2/MA0143.3/Jaspar

Match Rank:3
Score:0.86
Offset:0
Orientation:forward strand
Alignment:SCTTTGYT
CCTTTGTT

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:4
Score:0.85
Offset:0
Orientation:forward strand
Alignment:SCTTTGYT
CCWTTGTY

Sox3/MA0514.1/Jaspar

Match Rank:5
Score:0.85
Offset:0
Orientation:forward strand
Alignment:SCTTTGYT--
CCTTTGTTTT

Dof2/MA0020.1/Jaspar

Match Rank:6
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-SCTTTGYT
NGCTTT---

PB0071.1_Sox4_1/Jaspar

Match Rank:7
Score:0.83
Offset:-4
Orientation:reverse strand
Alignment:----SCTTTGYT-----
TNNTCCTTTGTTCTNNT

SOX10/MA0442.1/Jaspar

Match Rank:8
Score:0.83
Offset:1
Orientation:forward strand
Alignment:SCTTTGYT
-CTTTGT-

PB0061.1_Sox11_1/Jaspar

Match Rank:9
Score:0.83
Offset:-4
Orientation:reverse strand
Alignment:----SCTTTGYT-----
NNNTCCTTTGTTCTNNN

PBF/MA0064.1/Jaspar

Match Rank:10
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:SCTTTGYT
GCTTT---