Information for 3-NNNRACGCGNNN (Motif 9)


Reverse Opposite:

p-value:1e-30
log p-value:-6.976e+01
Information Content per bp:1.352
Number of Target Sequences with motif132.0
Percentage of Target Sequences with motif11.73%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets35.1 +/- 20.2bp
Average Position of motif in Background18.3 +/- 3.2bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SWI6(MacIsaac)/Yeast

Match Rank:1
Score:0.90
Offset:3
Orientation:forward strand
Alignment:NNNRACGCGNNN
---GACGCG---

CMTA3/MA0970.1/Jaspar

Match Rank:2
Score:0.87
Offset:1
Orientation:reverse strand
Alignment:NNNRACGCGNNN
-NNNACGCGG--

MBP1(MacIsaac)/Yeast

Match Rank:3
Score:0.86
Offset:3
Orientation:reverse strand
Alignment:NNNRACGCGNNN
---GACGCGT--

CMTA2/MA0969.1/Jaspar

Match Rank:4
Score:0.85
Offset:4
Orientation:reverse strand
Alignment:NNNRACGCGNNN-
----ACGCGGNNN

MBP1/MBP1_H2O2Hi/[](Harbison)/Yeast

Match Rank:5
Score:0.83
Offset:3
Orientation:forward strand
Alignment:NNNRACGCGNNN
---GACGCGT--

MBP1::SWI6/MA0330.1/Jaspar

Match Rank:6
Score:0.82
Offset:3
Orientation:reverse strand
Alignment:NNNRACGCGNNN
---AACGCGT--

FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer

Match Rank:7
Score:0.79
Offset:1
Orientation:forward strand
Alignment:NNNRACGCGNNN-
-HHCACGCGCBTN

MBP1/MA0329.1/Jaspar

Match Rank:8
Score:0.79
Offset:4
Orientation:forward strand
Alignment:NNNRACGCGNNN
----ACGCGTA-

ARG80(MacIsaac)/Yeast

Match Rank:9
Score:0.78
Offset:2
Orientation:forward strand
Alignment:NNNRACGCGNNN
--AGACGC----

RSC3/MA0374.1/Jaspar

Match Rank:10
Score:0.77
Offset:5
Orientation:forward strand
Alignment:NNNRACGCGNNN
-----CGCGCGG