Homer Known Motif Enrichment Results (/Volumes/Macintosh_HD/Users/zhengao/bio/Struc_features/in_data/chip-seq/1_narowPeaks/more/data/9_homer_out/98/TFI/)

Homer de novo Motif Results
Gene Ontology Enrichment Results
Known Motif Enrichment Results (txt file)
Total Target Sequences = 1125, Total Background Sequences = 738
RankMotifNameP-valuelog P-pvalueq-value (Benjamini)# Target Sequences with Motif% of Targets Sequences with Motif# Background Sequences with Motif% of Background Sequences with MotifMotif File PDF
1Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer1e-27-6.270e+010.0000202.017.96%19.72.67%motif file (matrix) pdf
2Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer1e-24-5.660e+010.0000217.019.29%28.33.84%motif file (matrix) pdf
3Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer1e-22-5.268e+010.0000181.016.09%19.22.60%motif file (matrix) pdf
4Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer1e-18-4.147e+010.0000119.010.58%8.41.14%motif file (matrix) pdf
5Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer1e-16-3.779e+010.0000115.010.22%9.81.32%motif file (matrix) pdf
6E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer1e-13-3.054e+010.000071.06.31%2.70.36%motif file (matrix) pdf
7Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer1e-12-2.812e+010.0000110.09.78%14.21.92%motif file (matrix) pdf
8E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer1e-12-2.808e+010.000083.07.38%6.40.87%motif file (matrix) pdf
9Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer1e-11-2.626e+010.000067.05.96%4.00.54%motif file (matrix) pdf
10IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer1e-11-2.617e+010.0000117.010.40%18.42.49%motif file (matrix) pdf
11SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer1e-10-2.482e+010.0000305.027.11%105.814.34%motif file (matrix) pdf
12TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer1e-10-2.395e+010.000081.07.20%8.11.10%motif file (matrix) pdf
13E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer1e-9-2.147e+010.000042.03.73%0.80.11%motif file (matrix) pdf
14TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer1e-8-1.874e+010.000047.04.18%2.70.37%motif file (matrix) pdf
15Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer1e-7-1.839e+010.000068.06.04%8.41.14%motif file (matrix) pdf
16SeqBias: polyA-repeat1e-7-1.765e+010.0000805.071.56%436.959.25%motif file (matrix) pdf
17Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer1e-7-1.726e+010.000080.07.11%13.91.88%motif file (matrix) pdf
18Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer1e-7-1.683e+010.000043.03.82%2.10.28%motif file (matrix) pdf
19Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer1e-7-1.633e+010.000069.06.13%10.51.43%motif file (matrix) pdf
20Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer1e-6-1.543e+010.000044.03.91%3.80.51%motif file (matrix) pdf
21TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer1e-6-1.481e+010.000053.04.71%6.30.85%motif file (matrix) pdf
22Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer1e-6-1.455e+010.000098.08.71%23.73.21%motif file (matrix) pdf
23ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer1e-6-1.450e+010.000093.08.27%21.42.90%motif file (matrix) pdf
24ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer1e-5-1.268e+010.000199.08.80%27.03.66%motif file (matrix) pdf
25c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer1e-5-1.262e+010.000134.03.02%2.10.28%motif file (matrix) pdf
26OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer1e-5-1.219e+010.000124.02.13%0.50.07%motif file (matrix) pdf
27Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer1e-5-1.187e+010.0001139.012.36%46.96.36%motif file (matrix) pdf
28Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer1e-5-1.164e+010.0001168.014.93%61.68.35%motif file (matrix) pdf
29Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)1e-5-1.156e+010.000148.04.27%7.71.04%motif file (matrix) pdf
30Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer1e-4-1.117e+010.000222.01.96%0.20.03%motif file (matrix) pdf
31KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer1e-4-1.097e+010.000234.03.02%3.30.45%motif file (matrix) pdf
32Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer1e-4-1.097e+010.000234.03.02%3.80.52%motif file (matrix) pdf
33Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer1e-4-1.041e+010.000436.03.20%4.70.63%motif file (matrix) pdf
34FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer1e-4-1.034e+010.000429.02.58%2.50.34%motif file (matrix) pdf
35SeqBias: CG bias1e-4-9.680e+000.0007919.081.69%546.174.06%motif file (matrix) pdf
36MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer1e-3-8.184e+000.003054.04.80%13.51.84%motif file (matrix) pdf
37E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer1e-3-8.104e+000.003216.01.42%0.20.03%motif file (matrix) pdf
38HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer1e-3-7.837e+000.004038.03.38%7.00.95%motif file (matrix) pdf
39Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer1e-3-7.819e+000.004073.06.49%22.13.00%motif file (matrix) pdf
40Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer1e-3-7.765e+000.0041131.011.64%51.66.99%motif file (matrix) pdf
41AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer1e-3-7.607e+000.0047107.09.51%39.75.38%motif file (matrix) pdf
42ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer1e-3-7.569e+000.004852.04.62%13.91.89%motif file (matrix) pdf
43Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer1e-3-7.483e+000.005119.01.69%1.70.22%motif file (matrix) pdf
44Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer1e-3-7.366e+000.005696.08.53%34.24.63%motif file (matrix) pdf
45PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer1e-3-7.251e+000.006160.05.33%17.92.42%motif file (matrix) pdf
46Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer1e-3-7.141e+000.006797.08.62%35.94.86%motif file (matrix) pdf
47MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer1e-3-7.063e+000.007048.04.27%12.01.63%motif file (matrix) pdf
48Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer1e-2-6.770e+000.009324.02.13%3.10.43%motif file (matrix) pdf
49Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer1e-2-6.720e+000.009575.06.67%25.43.45%motif file (matrix) pdf
50Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer1e-2-6.682e+000.009785.07.56%30.34.11%motif file (matrix) pdf
51NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer1e-2-6.578e+000.010613.01.16%0.30.04%motif file (matrix) pdf
52Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer1e-2-6.553e+000.010666.05.87%21.32.89%motif file (matrix) pdf
53Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer1e-2-6.553e+000.010666.05.87%21.02.85%motif file (matrix) pdf
54ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer1e-2-6.469e+000.011176.06.76%26.83.63%motif file (matrix) pdf
55EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer1e-2-6.457e+000.011180.07.11%28.63.88%motif file (matrix) pdf
56Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer1e-2-6.431e+000.011157.05.07%17.62.39%motif file (matrix) pdf
57ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer1e-2-6.070e+000.015712.01.07%0.30.04%motif file (matrix) pdf
58GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer1e-2-5.677e+000.022852.04.62%16.92.30%motif file (matrix) pdf
59ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer1e-2-5.619e+000.023856.04.98%18.42.49%motif file (matrix) pdf
60Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer1e-2-5.598e+000.023958.05.16%19.72.67%motif file (matrix) pdf
61EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer1e-2-5.568e+000.024262.05.51%21.52.91%motif file (matrix) pdf
62Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer1e-2-5.418e+000.027751.04.53%16.12.19%motif file (matrix) pdf
63Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer1e-2-5.323e+000.030065.05.78%23.03.12%motif file (matrix) pdf
64PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer1e-2-5.306e+000.030023.02.04%4.20.58%motif file (matrix) pdf
65MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer1e-2-5.274e+000.030528.02.49%6.70.91%motif file (matrix) pdf
66Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer1e-2-5.239e+000.031135.03.11%9.51.29%motif file (matrix) pdf
67NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer1e-2-5.202e+000.031314.01.24%1.80.24%motif file (matrix) pdf
68NRF(NRF)/Promoter/Homer1e-2-5.202e+000.031314.01.24%1.30.18%motif file (matrix) pdf
69E-box/Arabidopsis-Promoters/Homer1e-2-5.142e+000.032817.01.51%2.00.28%motif file (matrix) pdf
70FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer1e-2-4.944e+000.039422.01.96%4.70.64%motif file (matrix) pdf
71Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer1e-2-4.943e+000.039434.03.02%9.71.31%motif file (matrix) pdf
72Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer1e-2-4.760e+000.046124.02.13%5.70.77%motif file (matrix) pdf
73Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer1e-2-4.757e+000.0461239.021.24%123.516.74%motif file (matrix) pdf
74EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer1e-2-4.756e+000.046113.01.16%1.80.24%motif file (matrix) pdf
75HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer1e-2-4.756e+000.046113.01.16%1.00.14%motif file (matrix) pdf
76Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer1e-2-4.644e+000.049054.04.80%19.92.69%motif file (matrix) pdf
77KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer1e-2-4.636e+000.0490228.020.27%117.115.88%motif file (matrix) pdf