Information for 1-CCWTTGTT (Motif 1)


Reverse Opposite:

p-value:1e-121
log p-value:-2.793e+02
Information Content per bp:1.741
Number of Target Sequences with motif1020.0
Percentage of Target Sequences with motif34.00%
Number of Background Sequences with motif162.8
Percentage of Background Sequences with motif7.58%
Average Position of motif in Targets36.1 +/- 20.6bp
Average Position of motif in Background34.6 +/- 19.3bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:1
Score:0.97
Offset:0
Orientation:forward strand
Alignment:CCWTTGTT
CCWTTGTY

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:2
Score:0.96
Offset:0
Orientation:forward strand
Alignment:CCWTTGTT--
CCWTTGTYYB

Sox2/MA0143.3/Jaspar

Match Rank:3
Score:0.96
Offset:0
Orientation:forward strand
Alignment:CCWTTGTT
CCTTTGTT

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:4
Score:0.94
Offset:0
Orientation:forward strand
Alignment:CCWTTGTT--
CCATTGTTNY

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.93
Offset:-1
Orientation:forward strand
Alignment:-CCWTTGTT-
NCCATTGTTC

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:6
Score:0.92
Offset:-1
Orientation:reverse strand
Alignment:-CCWTTGTT-
NCCATTGTTY

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:7
Score:0.92
Offset:0
Orientation:forward strand
Alignment:CCWTTGTT--
YCTTTGTTCC

PB0061.1_Sox11_1/Jaspar

Match Rank:8
Score:0.92
Offset:-4
Orientation:reverse strand
Alignment:----CCWTTGTT-----
NNNTCCTTTGTTCTNNN

SOX10/MA0442.1/Jaspar

Match Rank:9
Score:0.92
Offset:1
Orientation:forward strand
Alignment:CCWTTGTT
-CTTTGT-

Sox6/MA0515.1/Jaspar

Match Rank:10
Score:0.92
Offset:0
Orientation:forward strand
Alignment:CCWTTGTT--
CCATTGTTTT