Information for 2-VCGCTGYG (Motif 2)


Reverse Opposite:

p-value:1e-58
log p-value:-1.339e+02
Information Content per bp:1.642
Number of Target Sequences with motif776.0
Percentage of Target Sequences with motif25.87%
Number of Background Sequences with motif187.6
Percentage of Background Sequences with motif8.73%
Average Position of motif in Targets36.2 +/- 21.2bp
Average Position of motif in Background41.5 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.86
Offset:2
Orientation:forward strand
Alignment:VCGCTGYG
--GCTGTG

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:VCGCTGYG
-NGCTN--

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.81
Offset:-4
Orientation:reverse strand
Alignment:----VCGCTGYG---
NNTCCTGCTGTGNNN

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.78
Offset:-4
Orientation:reverse strand
Alignment:----VCGCTGYG---
TNTCCTGCTGTGNNG

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.78
Offset:-4
Orientation:reverse strand
Alignment:----VCGCTGYG---
TCNCCTGCTGNGNNN

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-VCGCTGYG-
CCTGCTGAGH

CDC5(MYB)/Arabidopsis thaliana/AthaMap

Match Rank:7
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-VCGCTGYG--
CGCGCTGAGCN

CDC5/MA0579.1/Jaspar

Match Rank:8
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-VCGCTGYG--
CGCGCTGAGCN

MET28/MA0332.1/Jaspar

Match Rank:9
Score:0.73
Offset:3
Orientation:forward strand
Alignment:VCGCTGYG-
---CTGTGG

MET28(MacIsaac)/Yeast

Match Rank:10
Score:0.73
Offset:3
Orientation:forward strand
Alignment:VCGCTGYG-
---CTGTGG