Information for 5-GGACGCGG (Motif 4)


Reverse Opposite:

p-value:1e-45
log p-value:-1.057e+02
Information Content per bp:1.852
Number of Target Sequences with motif325.0
Percentage of Target Sequences with motif10.83%
Number of Background Sequences with motif31.9
Percentage of Background Sequences with motif1.49%
Average Position of motif in Targets36.5 +/- 21.3bp
Average Position of motif in Background36.9 +/- 14.7bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SWI6(MacIsaac)/Yeast

Match Rank:1
Score:0.86
Offset:1
Orientation:forward strand
Alignment:GGACGCGG
-GACGCG-

MBP1(MacIsaac)/Yeast

Match Rank:2
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:GGACGCGG
-GACGCGT

CMTA2/MA0969.1/Jaspar

Match Rank:3
Score:0.79
Offset:2
Orientation:reverse strand
Alignment:GGACGCGG---
--ACGCGGNNN

CMTA3/MA0970.1/Jaspar

Match Rank:4
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-GGACGCGG
NNNACGCGG

RSC3/MA0374.1/Jaspar

Match Rank:5
Score:0.79
Offset:3
Orientation:forward strand
Alignment:GGACGCGG--
---CGCGCGG

MBP1/MBP1_H2O2Hi/[](Harbison)/Yeast

Match Rank:6
Score:0.77
Offset:1
Orientation:forward strand
Alignment:GGACGCGG
-GACGCGT

MBP1/MA0329.1/Jaspar

Match Rank:7
Score:0.77
Offset:2
Orientation:forward strand
Alignment:GGACGCGG-
--ACGCGTA

MBP1::SWI6/MA0330.1/Jaspar

Match Rank:8
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:GGACGCGG
-AACGCGT

Adf1/dmmpmm(Pollard)/fly

Match Rank:9
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-GGACGCGG
CGACCGCG-

SKN7/SKN7_H2O2Lo/[](Harbison)/Yeast

Match Rank:10
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GGACGCGG-
GGCCCNGGC