Information for 3-CGCCCCGCCCCC (Motif 5)


Reverse Opposite:

p-value:1e-35
log p-value:-8.187e+01
Information Content per bp:1.723
Number of Target Sequences with motif179.0
Percentage of Target Sequences with motif5.97%
Number of Background Sequences with motif5.1
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets37.6 +/- 19.4bp
Average Position of motif in Background37.5 +/- 22.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SP1/MA0079.3/Jaspar

Match Rank:1
Score:0.94
Offset:1
Orientation:forward strand
Alignment:CGCCCCGCCCCC
-GCCCCGCCCCC

Sp1(Zf)/Promoter/Homer

Match Rank:2
Score:0.91
Offset:0
Orientation:forward strand
Alignment:CGCCCCGCCCCC
GGCCCCGCCCCC

SP2/MA0516.1/Jaspar

Match Rank:3
Score:0.89
Offset:1
Orientation:forward strand
Alignment:CGCCCCGCCCCC----
-GCCCCGCCCCCTCCC

KLF5/MA0599.1/Jaspar

Match Rank:4
Score:0.87
Offset:1
Orientation:forward strand
Alignment:CGCCCCGCCCCC
-GCCCCGCCCC-

POL003.1_GC-box/Jaspar

Match Rank:5
Score:0.87
Offset:-1
Orientation:reverse strand
Alignment:-CGCCCCGCCCCC-
NAGCCCCGCCCCCN

SeqBias: polyC-repeat

Match Rank:6
Score:0.86
Offset:2
Orientation:forward strand
Alignment:CGCCCCGCCCCC
--CCCCCCCCCC

KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.84
Offset:1
Orientation:reverse strand
Alignment:CGCCCCGCCCCC-
-GCCMCGCCCMCY

EGR1/MA0162.2/Jaspar

Match Rank:8
Score:0.84
Offset:1
Orientation:forward strand
Alignment:CGCCCCGCCCCC---
-CCCCCGCCCCCGCC

KLF16/MA0741.1/Jaspar

Match Rank:9
Score:0.83
Offset:1
Orientation:forward strand
Alignment:CGCCCCGCCCCC
-GCCACGCCCCC

Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.82
Offset:2
Orientation:reverse strand
Alignment:CGCCCCGCCCCC
--CCCCCCCC--