Information for 6-CCTGGGGGNG (Motif 6)


Reverse Opposite:

p-value:1e-35
log p-value:-8.099e+01
Information Content per bp:1.639
Number of Target Sequences with motif386.0
Percentage of Target Sequences with motif12.87%
Number of Background Sequences with motif72.4
Percentage of Background Sequences with motif3.37%
Average Position of motif in Targets36.2 +/- 18.8bp
Average Position of motif in Background36.1 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:1
Score:0.76
Offset:-4
Orientation:forward strand
Alignment:----CCTGGGGGNG
GTCCCCAGGGGA--

PB0103.1_Zic3_1/Jaspar

Match Rank:2
Score:0.76
Offset:-5
Orientation:reverse strand
Alignment:-----CCTGGGGGNG
NCCCCCCCGGGGGGN

PB0102.1_Zic2_1/Jaspar

Match Rank:3
Score:0.75
Offset:-5
Orientation:reverse strand
Alignment:-----CCTGGGGGNG
ACCCCCCCGGGGGGN

PB0101.1_Zic1_1/Jaspar

Match Rank:4
Score:0.75
Offset:-4
Orientation:forward strand
Alignment:----CCTGGGGGNG
CACCCCCGGGGGGG

MIG1/MA0337.1/Jaspar

Match Rank:5
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:CCTGGGGGNG
-GCGGGGN--

PB0204.1_Zfp740_2/Jaspar

Match Rank:6
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----CCTGGGGGNG---
ANTNCCGGGGGGAANTT

REI1/MA0364.1/Jaspar

Match Rank:7
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CCTGGGGGNG
TCAGGGG---

PB0087.1_Tcfap2c_1/Jaspar

Match Rank:8
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----CCTGGGGGNG-
ATTGCCTGAGGCGAA

PUT3/MA0358.1/Jaspar

Match Rank:9
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--CCTGGGGGNG
TTCCCGGG----

PB0085.1_Tcfap2a_1/Jaspar

Match Rank:10
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----CCTGGGGGNG-
ATTCCCTGAGGGGAA