Information for 16-CCCACTGAGC (Motif 8)


Reverse Opposite:

p-value:1e-20
log p-value:-4.828e+01
Information Content per bp:1.705
Number of Target Sequences with motif192.0
Percentage of Target Sequences with motif6.40%
Number of Background Sequences with motif28.7
Percentage of Background Sequences with motif1.34%
Average Position of motif in Targets37.0 +/- 19.3bp
Average Position of motif in Background29.2 +/- 32.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:1
Score:0.77
Offset:0
Orientation:forward strand
Alignment:CCCACTGAGC
CCTGCTGAGH

YPR022C/MA0436.1/Jaspar

Match Rank:2
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-CCCACTGAGC
CCCCACG----

CDC5(MYB)/Arabidopsis thaliana/AthaMap

Match Rank:3
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CCCACTGAGC-
CGCGCTGAGCN

CDC5/MA0579.1/Jaspar

Match Rank:4
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CCCACTGAGC-
CGCGCTGAGCN

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---CCCACTGAGC--
NNTCCTGCTGTGNNN

ZIC4/MA0751.1/Jaspar

Match Rank:6
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----CCCACTGAGC
GACCCCCCGCTGTGC

PB0205.1_Zic1_2/Jaspar

Match Rank:7
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---CCCACTGAGC--
TNTCCTGCTGTGNNG

PB0206.1_Zic2_2/Jaspar

Match Rank:8
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---CCCACTGAGC--
TCNCCTGCTGNGNNN

ZIC3/MA0697.1/Jaspar

Match Rank:9
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----CCCACTGAGC
GACCCCCCGCTGCGC

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---CCCACTGAGC
CCCCCTGCTGTG-