Information for 17-GCGGCAGCCG (Motif 9)


Reverse Opposite:

p-value:1e-20
log p-value:-4.677e+01
Information Content per bp:1.657
Number of Target Sequences with motif98.0
Percentage of Target Sequences with motif3.27%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets41.2 +/- 20.6bp
Average Position of motif in Background62.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SeqBias: GCW-triplet

Match Rank:1
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GCGGCAGCCG--
GCAGCAGCAGCA

Adf1/dmmpmm(Bergman)/fly

Match Rank:2
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----GCGGCAGCCG
NACAGAAGCAGC--

ERF094/MA1049.1/Jaspar

Match Rank:3
Score:0.69
Offset:2
Orientation:forward strand
Alignment:GCGGCAGCCG
--CGCCGCCG

Mad/dmmpmm(Pollard)/fly

Match Rank:4
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GCGGCAGCCG
GCGNCGCCNG

CRF2/MA0975.1/Jaspar

Match Rank:5
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GCGGCAGCCG
GGCGGCGG---

SUT1/SUT1_YPD/[](Harbison)/Yeast

Match Rank:6
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GCGGCAGCCG
GCGGGGCCGG

ERF112/MA1002.1/Jaspar

Match Rank:7
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GCGGCAGCCG
TGGCGGCGGN--

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:8
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GCGGCAGCCG--
NNAGCAGCTGCT

ERF4/MA0992.1/Jaspar

Match Rank:9
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GCGGCAGCCG
GGCGGCGG---

GCR1/Literature(Harbison)/Yeast

Match Rank:10
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GCGGCAGCCG
GAGGAAGCC-