Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 3000)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 2149)	% of Background Sequences with Motif
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-95	-2.202e+02	0.0000	811.0	27.03%	122.3	5.69%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-83	-1.916e+02	0.0000	706.0	23.53%	103.2	4.80%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-77	-1.777e+02	0.0000	652.0	21.73%	93.9	4.37%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-67	-1.551e+02	0.0000	475.0	15.83%	47.9	2.23%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-46	-1.070e+02	0.0000	383.0	12.77%	50.0	2.32%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-43	-1.002e+02	0.0000	454.0	15.13%	81.7	3.80%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-30	-7.077e+01	0.0000	188.0	6.27%	12.9	0.60%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-28	-6.577e+01	0.0000	341.0	11.37%	69.0	3.21%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-23	-5.425e+01	0.0000	304.0	10.13%	66.9	3.11%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-21	-4.841e+01	0.0000	877.0	29.23%	383.0	17.82%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-19	-4.573e+01	0.0000	186.0	6.20%	28.9	1.34%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-18	-4.155e+01	0.0000	260.0	8.67%	62.2	2.90%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-15	-3.597e+01	0.0000	146.0	4.87%	22.1	1.03%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-14	-3.437e+01	0.0000	219.0	7.30%	53.5	2.49%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e-14	-3.265e+01	0.0000	179.0	5.97%	38.3	1.78%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-13	-3.100e+01	0.0000	120.0	4.00%	17.2	0.80%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-13	-3.088e+01	0.0000	139.0	4.63%	24.1	1.12%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-12	-2.773e+01	0.0000	540.0	18.00%	235.3	10.95%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-11	-2.559e+01	0.0000	960.0	32.00%	503.6	23.43%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-11	-2.541e+01	0.0000	130.0	4.33%	26.9	1.25%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-10	-2.500e+01	0.0000	100.0	3.33%	15.4	0.72%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-10	-2.468e+01	0.0000	102.0	3.40%	16.5	0.77%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-9	-2.137e+01	0.0000	179.0	5.97%	53.3	2.48%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-8	-2.030e+01	0.0000	351.0	11.70%	146.7	6.83%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-8	-1.962e+01	0.0000	50.0	1.67%	3.9	0.18%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-8	-1.926e+01	0.0000	441.0	14.70%	201.2	9.36%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-7	-1.831e+01	0.0000	152.0	5.07%	45.2	2.10%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-7	-1.822e+01	0.0000	204.0	6.80%	71.8	3.34%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-7	-1.807e+01	0.0000	147.0	4.90%	43.9	2.04%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-7	-1.800e+01	0.0000	335.0	11.17%	143.9	6.70%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-7	-1.738e+01	0.0000	246.0	8.20%	95.3	4.44%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-7	-1.737e+01	0.0000	86.0	2.87%	17.1	0.79%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-7	-1.730e+01	0.0000	169.0	5.63%	55.4	2.58%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-7	-1.649e+01	0.0000	156.0	5.20%	50.9	2.37%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-7	-1.630e+01	0.0000	234.0	7.80%	91.7	4.27%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-6	-1.598e+01	0.0000	276.0	9.20%	115.4	5.37%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-6	-1.506e+01	0.0000	105.0	3.50%	28.2	1.31%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-6	-1.383e+01	0.0000	156.0	5.20%	55.0	2.56%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-5	-1.379e+01	0.0000	122.0	4.07%	38.2	1.78%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-5	-1.348e+01	0.0000	127.0	4.23%	41.2	1.92%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e-5	-1.337e+01	0.0000	347.0	11.57%	164.4	7.65%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-5	-1.292e+01	0.0000	59.0	1.97%	12.0	0.56%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-5	-1.191e+01	0.0001	22.0	0.73%	0.0	0.00%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-5	-1.182e+01	0.0001	146.0	4.87%	54.2	2.52%
SeqBias: CG bias	SSSSSSSSSS	1e-4	-1.110e+01	0.0001	2014.0	67.13%	1320.8	61.47%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-4	-1.086e+01	0.0002	142.0	4.73%	54.8	2.55%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-4	-1.083e+01	0.0002	164.0	5.47%	66.1	3.08%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-4	-1.027e+01	0.0003	132.0	4.40%	50.1	2.33%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-4	-1.026e+01	0.0003	27.0	0.90%	2.9	0.13%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-4	-1.005e+01	0.0003	244.0	8.13%	114.2	5.31%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-4	-9.951e+00	0.0004	391.0	13.03%	204.9	9.53%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-4	-9.694e+00	0.0005	83.0	2.77%	26.4	1.23%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-4	-9.599e+00	0.0005	50.0	1.67%	11.5	0.54%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-4	-9.451e+00	0.0006	61.0	2.03%	16.1	0.75%
SeqBias: GA-repeat	GAGAGAGAGA	1e-4	-9.367e+00	0.0006	1134.0	37.80%	702.4	32.69%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-4	-9.317e+00	0.0006	211.0	7.03%	97.9	4.56%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-4	-9.223e+00	0.0007	28.0	0.93%	3.0	0.14%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-3	-9.170e+00	0.0007	97.0	3.23%	34.4	1.60%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-3	-9.170e+00	0.0007	75.0	2.50%	23.6	1.10%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-3	-8.762e+00	0.0010	61.0	2.03%	17.3	0.80%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-3	-8.703e+00	0.0011	99.0	3.30%	36.2	1.69%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-3	-8.630e+00	0.0011	69.0	2.30%	21.5	1.00%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-3	-8.583e+00	0.0012	81.0	2.70%	27.2	1.27%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-3	-8.482e+00	0.0013	393.0	13.10%	212.9	9.91%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-3	-8.360e+00	0.0014	66.0	2.20%	20.5	0.95%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-3	-8.324e+00	0.0014	202.0	6.73%	95.2	4.43%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-3	-8.206e+00	0.0016	46.0	1.53%	11.6	0.54%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-3	-7.933e+00	0.0020	118.0	3.93%	48.6	2.26%
SeqBias: polyC-repeat	CCCCCCCCCC	1e-3	-7.880e+00	0.0021	2824.0	94.13%	1969.3	91.65%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-3	-7.867e+00	0.0021	45.0	1.50%	12.0	0.56%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-3	-7.767e+00	0.0023	68.0	2.27%	22.4	1.04%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-3	-7.733e+00	0.0024	142.0	4.73%	62.7	2.92%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-3	-7.639e+00	0.0026	203.0	6.77%	99.0	4.61%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-3	-7.605e+00	0.0026	383.0	12.77%	210.5	9.80%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-3	-7.603e+00	0.0026	249.0	8.30%	126.8	5.90%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-3	-7.588e+00	0.0026	244.0	8.13%	123.7	5.76%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-3	-7.458e+00	0.0029	32.0	1.07%	6.3	0.29%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-2	-6.887e+00	0.0051	28.0	0.93%	5.2	0.24%
SeqBias: polyA-repeat	AAAAAAAAAA	1e-2	-6.871e+00	0.0051	2526.0	84.20%	1737.7	80.87%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-2	-6.774e+00	0.0055	74.0	2.47%	27.5	1.28%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-2	-6.413e+00	0.0078	61.0	2.03%	21.3	0.99%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-2	-6.279e+00	0.0088	1459.0	48.63%	956.0	44.49%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-2	-6.031e+00	0.0112	178.0	5.93%	89.4	4.16%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-2	-5.964e+00	0.0118	28.0	0.93%	7.0	0.32%
SeqBias: CG-repeat	CGCGCGCGCG	1e-2	-5.511e+00	0.0184	622.0	20.73%	381.6	17.76%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-2	-5.500e+00	0.0184	92.0	3.07%	40.1	1.87%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-2	-5.382e+00	0.0205	79.0	2.63%	33.2	1.54%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-2	-5.283e+00	0.0223	43.0	1.43%	14.8	0.69%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-2	-5.254e+00	0.0227	205.0	6.83%	109.5	5.10%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e-2	-5.215e+00	0.0234	118.0	3.93%	56.2	2.61%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-2	-5.163e+00	0.0243	392.0	13.07%	231.0	10.75%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-2	-5.109e+00	0.0254	114.0	3.80%	54.8	2.55%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-2	-5.050e+00	0.0267	63.0	2.10%	25.4	1.18%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-2	-4.866e+00	0.0317	64.0	2.13%	26.1	1.21%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-2	-4.865e+00	0.0317	9.0	0.30%	0.4	0.02%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-2	-4.789e+00	0.0335	292.0	9.73%	167.2	7.78%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e-2	-4.653e+00	0.0380	154.0	5.13%	80.1	3.73%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-1	-4.525e+00	0.0428	66.0	2.20%	28.7	1.34%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-1	-4.498e+00	0.0435	102.0	3.40%	50.0	2.33%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-1	-4.477e+00	0.0440	164.0	5.47%	87.3	4.06%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-1	-4.451e+00	0.0447	167.0	5.57%	89.2	4.15%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-1	-4.433e+00	0.0451	62.0	2.07%	26.6	1.24%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-1	-4.386e+00	0.0468	81.0	2.70%	37.1	1.73%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-1	-4.385e+00	0.0468	19.0	0.63%	4.2	0.20%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-4.385e+00	0.0468	19.0	0.63%	4.4	0.20%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-1	-4.345e+00	0.0474	91.0	3.03%	43.9	2.04%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-1	-4.344e+00	0.0474	14.0	0.47%	2.7	0.13%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-1	-4.344e+00	0.0474	14.0	0.47%	2.5	0.12%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-1	-4.324e+00	0.0474	8.0	0.27%	0.0	0.00%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-1	-4.324e+00	0.0474	8.0	0.27%	0.6	0.03%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-1	-4.324e+00	0.0474	8.0	0.27%	0.9	0.04%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-1	-4.265e+00	0.0486	148.0	4.93%	78.5	3.65%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e-1	-4.225e+00	0.0497	11.0	0.37%	1.7	0.08%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-1	-4.225e+00	0.0497	11.0	0.37%	1.7	0.08%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-1	-4.211e+00	0.0499	146.0	4.87%	77.5	3.61%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-1	-4.101e+00	0.0552	150.0	5.00%	80.7	3.76%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-1	-4.076e+00	0.0562	153.0	5.10%	82.8	3.85%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-1	-3.946e+00	0.0634	128.0	4.27%	67.7	3.15%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-1	-3.946e+00	0.0634	49.0	1.63%	20.4	0.95%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-1	-3.925e+00	0.0636	36.0	1.20%	13.7	0.64%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-1	-3.783e+00	0.0728	7.0	0.23%	0.9	0.04%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-1	-3.779e+00	0.0728	41.0	1.37%	16.9	0.79%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-1	-3.628e+00	0.0836	108.0	3.60%	56.2	2.62%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e-1	-3.589e+00	0.0862	42.0	1.40%	17.3	0.80%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e-1	-3.561e+00	0.0879	188.0	6.27%	107.9	5.02%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e-1	-3.511e+00	0.0918	12.0	0.40%	3.0	0.14%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-1	-3.380e+00	0.1030	14.0	0.47%	3.5	0.16%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-1	-3.380e+00	0.1030	14.0	0.47%	3.3	0.15%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-1	-3.295e+00	0.1112	26.0	0.87%	9.9	0.46%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-1	-3.275e+00	0.1126	24.0	0.80%	8.6	0.40%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-1	-3.242e+00	0.1146	6.0	0.20%	0.3	0.02%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-1	-3.242e+00	0.1146	6.0	0.20%	0.2	0.01%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-1	-3.225e+00	0.1157	35.0	1.17%	14.5	0.67%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-1	-3.194e+00	0.1185	163.0	5.43%	93.4	4.35%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-1	-3.165e+00	0.1210	59.0	1.97%	28.1	1.31%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-1	-2.973e+00	0.1456	21.0	0.70%	7.0	0.33%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e-1	-2.968e+00	0.1456	15.0	0.50%	4.3	0.20%
Tal1	CATCTG	1e-1	-2.927e+00	0.1503	159.0	5.30%	92.2	4.29%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-2.807e+00	0.1682	202.0	6.73%	121.2	5.64%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e-1	-2.712e+00	0.1835	10.0	0.33%	2.7	0.12%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e-1	-2.669e+00	0.1902	36.0	1.20%	16.8	0.78%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-1	-2.655e+00	0.1916	12.0	0.40%	3.9	0.18%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-1	-2.644e+00	0.1924	16.0	0.53%	5.7	0.26%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-1	-2.638e+00	0.1924	14.0	0.47%	4.8	0.22%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-1	-2.638e+00	0.1924	14.0	0.47%	4.1	0.19%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-1	-2.614e+00	0.1942	27.0	0.90%	11.1	0.52%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-2.572e+00	0.2010	97.0	3.23%	54.3	2.53%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-1	-2.544e+00	0.2053	57.0	1.90%	29.3	1.36%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e-1	-2.513e+00	0.2104	23.0	0.77%	9.3	0.43%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-1	-2.503e+00	0.2112	282.0	9.40%	177.1	8.24%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e-1	-2.498e+00	0.2112	227.0	7.57%	140.3	6.53%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-1	-2.498e+00	0.2112	30.0	1.00%	13.0	0.61%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-1	-2.424e+00	0.2239	53.0	1.77%	28.0	1.30%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-1	-2.420e+00	0.2239	19.0	0.63%	7.6	0.35%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-1	-2.379e+00	0.2297	17.0	0.57%	6.6	0.31%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e-1	-2.379e+00	0.2297	17.0	0.57%	6.8	0.32%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-1	-2.353e+00	0.2343	59.0	1.97%	31.8	1.48%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-1	-2.353e+00	0.2343	400.0	13.33%	259.6	12.08%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-1	-2.330e+00	0.2354	9.0	0.30%	2.8	0.13%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-1	-2.330e+00	0.2354	9.0	0.30%	2.4	0.11%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-1	-2.326e+00	0.2354	24.0	0.80%	10.4	0.48%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e-1	-2.324e+00	0.2354	62.0	2.07%	33.2	1.54%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-2.222e+00	0.2574	42.0	1.40%	21.9	1.02%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-2.214e+00	0.2578	20.0	0.67%	8.7	0.40%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-2.161e+00	0.2686	4.0	0.13%	0.5	0.02%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-2.161e+00	0.2686	4.0	0.13%	0.0	0.00%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-2.081e+00	0.2891	46.0	1.53%	24.9	1.16%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-2.036e+00	0.3006	21.0	0.70%	9.1	0.42%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.977e+00	0.3152	10.0	0.33%	3.8	0.18%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.977e+00	0.3152	10.0	0.33%	4.0	0.19%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-1.949e+00	0.3224	24.0	0.80%	11.7	0.54%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.895e+00	0.3383	82.0	2.73%	48.7	2.27%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.864e+00	0.3468	54.0	1.80%	30.7	1.43%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.821e+00	0.3601	49.0	1.63%	27.6	1.28%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-1.762e+00	0.3798	36.0	1.20%	19.6	0.91%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.745e+00	0.3840	23.0	0.77%	11.9	0.56%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-1.712e+00	0.3946	2969.0	98.97%	2119.6	98.64%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-1.677e+00	0.4064	172.0	5.73%	110.1	5.12%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.660e+00	0.4066	9.0	0.30%	3.3	0.15%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.660e+00	0.4066	9.0	0.30%	3.2	0.15%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.660e+00	0.4066	9.0	0.30%	4.0	0.19%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-1.620e+00	0.4206	3.0	0.10%	0.4	0.02%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.607e+00	0.4206	7.0	0.23%	2.4	0.11%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-1.607e+00	0.4206	7.0	0.23%	2.2	0.10%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.607e+00	0.4206	7.0	0.23%	3.0	0.14%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.598e+00	0.4211	14.0	0.47%	7.0	0.33%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.575e+00	0.4283	223.0	7.43%	146.7	6.83%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.537e+00	0.4426	53.0	1.77%	31.4	1.46%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.524e+00	0.4460	17.0	0.57%	8.6	0.40%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.516e+00	0.4474	25.0	0.83%	13.6	0.63%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.488e+00	0.4577	93.0	3.10%	58.6	2.73%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.419e+00	0.4879	26.0	0.87%	14.4	0.67%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.367e+00	0.5085	41.0	1.37%	24.5	1.14%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.367e+00	0.5085	41.0	1.37%	24.6	1.15%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-1.346e+00	0.5167	24.0	0.80%	13.9	0.65%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.318e+00	0.5287	16.0	0.53%	8.6	0.40%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.276e+00	0.5483	11.0	0.37%	5.8	0.27%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.273e+00	0.5483	609.0	20.30%	422.0	19.64%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.182e+00	0.5931	9.0	0.30%	4.4	0.21%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.182e+00	0.5931	9.0	0.30%	4.2	0.20%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.179e+00	0.5931	4.0	0.13%	1.8	0.08%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.178e+00	0.5931	29.0	0.97%	17.3	0.81%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.145e+00	0.6069	271.0	9.03%	185.5	8.64%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.115e+00	0.6219	286.0	9.53%	196.2	9.13%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.110e+00	0.6224	21.0	0.70%	12.3	0.57%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.084e+00	0.6353	46.0	1.53%	29.7	1.38%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.080e+00	0.6353	2.0	0.07%	0.3	0.02%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-1.080e+00	0.6353	2.0	0.07%	0.9	0.04%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.080e+00	0.6353	2.0	0.07%	0.8	0.04%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.080e+00	0.6353	2.0	0.07%	1.0	0.04%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.080e+00	0.6353	2.0	0.07%	0.4	0.02%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.080e+00	0.6353	2.0	0.07%	0.0	0.00%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.080e+00	0.6353	2.0	0.07%	0.0	0.00%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-1.079e+00	0.6353	7.0	0.23%	3.8	0.18%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.070e+00	0.6353	40.0	1.33%	25.2	1.17%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.066e+00	0.6353	72.0	2.40%	47.6	2.22%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-1.060e+00	0.6353	542.0	18.07%	378.7	17.62%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.048e+00	0.6353	10.0	0.33%	5.8	0.27%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-1.044e+00	0.6353	28.0	0.93%	17.1	0.79%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-1.005e+00	0.6437	110.0	3.67%	74.3	3.46%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-9.670e-01	0.6658	23.0	0.77%	14.5	0.68%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-9.602e-01	0.6658	5.0	0.17%	2.7	0.13%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-9.602e-01	0.6658	5.0	0.17%	2.7	0.12%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-9.510e-01	0.6675	17.0	0.57%	10.3	0.48%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-9.445e-01	0.6688	59.0	1.97%	39.6	1.84%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-9.445e-01	0.6688	14.0	0.47%	8.1	0.38%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-9.419e-01	0.6688	8.0	0.27%	4.1	0.19%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-9.411e-01	0.6688	33.0	1.10%	21.2	0.99%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-9.411e-01	0.6688	33.0	1.10%	21.7	1.01%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-9.241e-01	0.6688	2955.0	98.50%	2113.5	98.36%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-9.075e-01	0.6761	151.0	5.03%	104.9	4.88%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-8.901e-01	0.6850	145.0	4.83%	100.2	4.66%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-8.458e-01	0.7129	89.0	2.97%	61.1	2.84%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-8.404e-01	0.7137	79.0	2.63%	55.0	2.56%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-8.346e-01	0.7148	42.0	1.40%	28.4	1.32%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-7.835e-01	0.7491	380.0	12.67%	269.6	12.55%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-7.811e-01	0.7491	95.0	3.17%	66.1	3.08%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-7.792e-01	0.7491	13.0	0.43%	8.1	0.38%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-7.508e-01	0.7643	72.0	2.40%	50.8	2.36%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-7.498e-01	0.7643	34.0	1.13%	23.1	1.08%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-7.417e-01	0.7648	17.0	0.57%	11.6	0.54%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-7.231e-01	0.7728	7.0	0.23%	4.6	0.21%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-7.231e-01	0.7728	7.0	0.23%	4.1	0.19%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-7.142e-01	0.7765	21.0	0.70%	14.2	0.66%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-6.993e-01	0.7850	67.0	2.23%	47.7	2.22%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-6.864e-01	0.7919	11.0	0.37%	7.9	0.37%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-6.511e-01	0.8171	133.0	4.43%	95.2	4.43%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-6.451e-01	0.8186	37.0	1.23%	26.5	1.23%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-6.385e-01	0.8207	48.0	1.60%	34.7	1.61%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-6.224e-01	0.8308	81.0	2.70%	58.1	2.70%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-6.149e-01	0.8336	16.0	0.53%	11.2	0.52%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-5.909e-01	0.8505	5.0	0.17%	3.5	0.16%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-5.730e-01	0.8625	17.0	0.57%	12.4	0.58%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-5.522e-01	0.8771	44.0	1.47%	32.2	1.50%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-5.400e-01	0.8775	1.0	0.03%	0.0	0.00%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-5.400e-01	0.8775	1.0	0.03%	0.0	0.00%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-5.400e-01	0.8775	1.0	0.03%	0.6	0.03%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-5.379e-01	0.8775	14.0	0.47%	10.2	0.48%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-5.379e-01	0.8775	14.0	0.47%	11.0	0.51%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-5.287e-01	0.8775	6.0	0.20%	4.0	0.19%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-4.801e-01	0.9105	7.0	0.23%	5.5	0.25%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-4.801e-01	0.9105	7.0	0.23%	5.5	0.26%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-4.801e-01	0.9105	7.0	0.23%	5.1	0.24%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-4.639e-01	0.9218	48.0	1.60%	36.5	1.70%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-4.489e-01	0.9322	33.0	1.10%	25.4	1.18%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-4.403e-01	0.9367	8.0	0.27%	6.3	0.29%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-4.272e-01	0.9455	46.0	1.53%	35.6	1.66%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.271e-01	0.9455	3.0	0.10%	2.2	0.10%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-4.271e-01	0.9455	3.0	0.10%	3.0	0.14%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-4.271e-01	0.9455	3.0	0.10%	2.4	0.11%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.271e-01	0.9455	3.0	0.10%	2.2	0.10%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-4.149e-01	0.9455	2854.0	95.13%	2048.1	95.31%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-4.047e-01	0.9457	31.0	1.03%	24.2	1.13%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-4.036e-01	0.9457	71.0	2.37%	54.4	2.53%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-3.991e-01	0.9457	14.0	0.47%	12.0	0.56%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-3.871e-01	0.9521	19.0	0.63%	15.3	0.71%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-3.799e-01	0.9555	161.0	5.37%	121.9	5.67%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-3.742e-01	0.9575	24.0	0.80%	19.1	0.89%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-3.623e-01	0.9655	74.0	2.47%	57.6	2.68%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-3.616e-01	0.9655	54.0	1.80%	42.5	1.98%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e0	-3.551e-01	0.9656	156.0	5.20%	118.1	5.50%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-3.491e-01	0.9679	63.0	2.10%	49.5	2.30%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-2.932e-01	1.0000	80.0	2.67%	63.1	2.94%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-2.833e-01	1.0000	34.0	1.13%	28.5	1.33%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-2.704e-01	1.0000	35.0	1.17%	29.2	1.36%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e0	-2.700e-01	1.0000	209.0	6.97%	161.0	7.49%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-2.520e-01	1.0000	27.0	0.90%	23.2	1.08%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-2.476e-01	1.0000	11.0	0.37%	10.6	0.49%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-2.360e-01	1.0000	38.0	1.27%	32.7	1.52%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-2.345e-01	1.0000	12.0	0.40%	11.7	0.54%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-2.344e-01	1.0000	18.0	0.60%	16.9	0.79%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-2.335e-01	1.0000	52.0	1.73%	43.5	2.02%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-2.226e-01	1.0000	2.0	0.07%	2.2	0.10%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-2.113e-01	1.0000	14.0	0.47%	13.6	0.63%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-2.109e-01	1.0000	6.0	0.20%	6.9	0.32%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-2.109e-01	1.0000	6.0	0.20%	6.0	0.28%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.912e-01	1.0000	1.0	0.03%	1.0	0.05%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-1.893e-01	1.0000	1699.0	56.63%	1244.1	57.90%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.737e-01	1.0000	50.0	1.67%	44.0	2.05%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.443e-01	1.0000	15.0	0.50%	15.9	0.74%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.208e-01	1.0000	3.0	0.10%	4.9	0.23%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.147e-01	1.0000	143.0	4.77%	118.2	5.50%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.100e-01	1.0000	46.0	1.53%	42.2	1.96%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.084e-01	1.0000	35.0	1.17%	33.5	1.56%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-1.063e-01	1.0000	2.0	0.07%	3.9	0.18%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.045e-01	1.0000	73.0	2.43%	64.3	2.99%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-9.972e-02	1.0000	24.0	0.80%	24.8	1.16%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-9.868e-02	1.0000	16.0	0.53%	17.1	0.79%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-9.673e-02	1.0000	200.0	6.67%	163.3	7.60%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-9.595e-02	1.0000	38.0	1.27%	36.3	1.69%
SeqBias: CA-repeat	CACACACACA	1e0	-9.073e-02	1.0000	578.0	19.27%	446.4	20.77%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-8.258e-02	1.0000	21.0	0.70%	22.4	1.04%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-7.853e-02	1.0000	6.0	0.20%	8.9	0.41%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-7.804e-02	1.0000	37.0	1.23%	36.8	1.71%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-7.795e-02	1.0000	11.0	0.37%	13.2	0.61%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-7.535e-02	1.0000	1.0	0.03%	2.1	0.10%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-7.535e-02	1.0000	1.0	0.03%	2.4	0.11%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-7.535e-02	1.0000	1.0	0.03%	2.2	0.10%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-7.346e-02	1.0000	378.0	12.60%	300.8	14.00%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-7.315e-02	1.0000	14.0	0.47%	16.9	0.79%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-6.177e-02	1.0000	20.0	0.67%	22.6	1.05%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-5.581e-02	1.0000	58.0	1.93%	55.7	2.59%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-4.877e-02	1.0000	7.0	0.23%	10.6	0.49%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-4.424e-02	1.0000	296.0	9.87%	243.5	11.33%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-3.887e-02	1.0000	42.0	1.40%	43.5	2.02%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-3.635e-02	1.0000	138.0	4.60%	122.1	5.68%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-3.495e-02	1.0000	52.0	1.73%	52.9	2.46%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-3.254e-02	1.0000	54.0	1.80%	54.9	2.55%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-3.208e-02	1.0000	18.0	0.60%	22.2	1.04%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-3.202e-02	1.0000	61.0	2.03%	60.2	2.80%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-3.119e-02	1.0000	32.0	1.07%	35.9	1.67%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-2.704e-02	1.0000	147.0	4.90%	131.8	6.13%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-2.394e-02	1.0000	2.0	0.07%	5.7	0.27%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-2.215e-02	1.0000	17.0	0.57%	22.4	1.04%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-2.124e-02	1.0000	21.0	0.70%	26.5	1.23%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.516e-02	1.0000	62.0	2.07%	64.8	3.01%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-1.468e-02	1.0000	21.0	0.70%	27.5	1.28%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.437e-02	1.0000	23.0	0.77%	29.4	1.37%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.400e-02	1.0000	39.0	1.30%	44.9	2.09%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.353e-02	1.0000	27.0	0.90%	34.0	1.58%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-9.865e-03	1.0000	17.0	0.57%	24.1	1.12%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-9.284e-03	1.0000	316.0	10.53%	271.9	12.65%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-8.568e-03	1.0000	111.0	3.70%	108.1	5.03%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-7.727e-03	1.0000	114.0	3.80%	111.3	5.18%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-6.330e-03	1.0000	221.0	7.37%	199.4	9.28%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-6.312e-03	1.0000	16.0	0.53%	24.3	1.13%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-5.766e-03	1.0000	140.0	4.67%	134.3	6.25%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-4.686e-03	1.0000	240.0	8.00%	216.4	10.07%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-2.923e-03	1.0000	64.0	2.13%	72.4	3.37%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-2.562e-03	1.0000	16.0	0.53%	26.4	1.23%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-2.136e-03	1.0000	133.0	4.43%	133.1	6.19%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-2.092e-03	1.0000	146.0	4.87%	144.6	6.73%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.711e-03	1.0000	73.0	2.43%	82.3	3.83%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.484e-03	1.0000	4.0	0.13%	12.3	0.57%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-1.480e-03	1.0000	78.0	2.60%	87.2	4.06%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-9.150e-04	1.0000	94.0	3.13%	103.3	4.81%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-7.510e-04	1.0000	6.0	0.20%	16.9	0.79%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-6.180e-04	1.0000	26.0	0.87%	40.4	1.88%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-5.530e-04	1.0000	93.0	3.10%	104.6	4.87%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-5.440e-04	1.0000	126.0	4.20%	133.6	6.22%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-4.630e-04	1.0000	99.0	3.30%	110.7	5.15%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-3.890e-04	1.0000	25.0	0.83%	40.9	1.91%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-1.800e-04	1.0000	192.0	6.40%	194.0	9.03%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.470e-04	1.0000	37.0	1.23%	55.4	2.58%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.030e-04	1.0000	244.0	8.13%	240.3	11.18%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-2.400e-05	1.0000	62.0	2.07%	85.7	3.99%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.500e-05	1.0000	20.0	0.67%	41.8	1.94%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.100e-05	1.0000	1.0	0.03%	12.6	0.59%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-1.100e-05	1.0000	36.0	1.20%	60.3	2.81%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-2.000e-06	1.0000	48.0	1.60%	77.5	3.61%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-2.000e-06	1.0000	191.0	6.37%	212.8	9.90%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-2.000e-06	1.0000	236.0	7.87%	251.9	11.72%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.000e-06	1.0000	48.0	1.60%	80.0	3.72%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-0.000e+00	1.0000	300.0	10.00%	316.2	14.71%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-0.000e+00	1.0000	296.0	9.87%	315.8	14.70%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-0.000e+00	1.0000	17.0	0.57%	55.8	2.60%
SeqBias: TA-repeat	TATATATATA	1e0	-0.000e+00	1.0000	138.0	4.60%	211.9	9.86%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-0.000e+00	1.0000	50.0	1.67%	123.0	5.72%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	3000.0	100.00%	2148.8	100.00%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	0.2	0.01%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	0.000e+00	1.0000	0.0	0.00%	1.0	0.04%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.5	0.02%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	3.2	0.15%