Information for 4-NWGAGCHVAGDN (Motif 11)


Reverse Opposite:

p-value:1e-7
log p-value:-1.802e+01
Information Content per bp:1.364
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif1.33%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets40.8 +/- 16.4bp
Average Position of motif in Background32.5 +/- 5.5bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MAC1/Literature(Harbison)/Yeast

Match Rank:1
Score:0.72
Offset:2
Orientation:forward strand
Alignment:NWGAGCHVAGDN
--GAGCAAA---

MAC1/MA0326.1/Jaspar

Match Rank:2
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:NWGAGCHVAGDN
-TGAGCAAA---

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.68
Offset:2
Orientation:forward strand
Alignment:NWGAGCHVAGDN
--CAGCC-----

GATA3/MA0037.2/Jaspar

Match Rank:4
Score:0.62
Offset:3
Orientation:forward strand
Alignment:NWGAGCHVAGDN
---AGATAAGA-

Gata1/MA0035.3/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:NWGAGCHVAGDN
-ANAGATAAGAA

Gata4/MA0482.1/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:NWGAGCHVAGDN
NNGAGATAAGA-

PB0021.1_Gata3_1/Jaspar

Match Rank:7
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----NWGAGCHVAGDN------
TTTTTAGAGATAAGAAATAAAG

CUP2/MA0287.1/Jaspar

Match Rank:8
Score:0.61
Offset:2
Orientation:forward strand
Alignment:NWGAGCHVAGDN-
--CAGCAAAAATG

Dof2/MA0020.1/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:NWGAGCHVAGDN
-AAAGCA-----

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----NWGAGCHVAGDN
GRTGMTRGAGCC-----