Information for 6-AGRTCMCG (Motif 16)


Reverse Opposite:

p-value:1e-5
log p-value:-1.370e+01
Information Content per bp:1.690
Number of Target Sequences with motif92.0
Percentage of Target Sequences with motif3.84%
Number of Background Sequences with motif41.6
Percentage of Background Sequences with motif1.65%
Average Position of motif in Targets39.9 +/- 19.5bp
Average Position of motif in Background37.6 +/- 20.2bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NR4A2/MA0160.1/Jaspar

Match Rank:1
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-AGRTCMCG
AAGGTCAC-

RTG3/Literature(Harbison)/Yeast

Match Rank:2
Score:0.73
Offset:1
Orientation:forward strand
Alignment:AGRTCMCG
-GGTCAC-

Mitf/MA0620.1/Jaspar

Match Rank:3
Score:0.70
Offset:1
Orientation:forward strand
Alignment:AGRTCMCG---
-GGTCACGTGG

ZmHOX2a(2)(HD-HOX)/Zea mays/AthaMap

Match Rank:4
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-AGRTCMCG
CAGATCA--

POL011.1_XCPE1/Jaspar

Match Rank:5
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:AGRTCMCG---
-GGTCCCGCCC

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AGRTCMCG
AGGTCA--

Arntl/MA0603.1/Jaspar

Match Rank:7
Score:0.67
Offset:1
Orientation:forward strand
Alignment:AGRTCMCG---
-GGTCACGTGC

PB0053.1_Rara_1/Jaspar

Match Rank:8
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------AGRTCMCG--
TCTCAAAGGTCACCTG

TYE7(MacIsaac)/Yeast

Match Rank:9
Score:0.67
Offset:2
Orientation:forward strand
Alignment:AGRTCMCG--
--GTCACGTG

Pax2/MA0067.1/Jaspar

Match Rank:10
Score:0.66
Offset:1
Orientation:forward strand
Alignment:AGRTCMCG-
-AGTCACGC