Information for 15-TTACGAGGTC (Motif 18)


Reverse Opposite:

p-value:1e-4
log p-value:-1.058e+01
Information Content per bp:1.688
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets40.4 +/- 18.6bp
Average Position of motif in Background25.6 +/- 9.7bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0048.1_Hoxa13/Jaspar

Match Rank:1
Score:0.73
Offset:-5
Orientation:reverse strand
Alignment:-----TTACGAGGTC-
ANATTTTACGAGNNNN

HOXC13/MA0907.1/Jaspar

Match Rank:2
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---TTACGAGGTC
NTTTTACGAGN--

PH0068.1_Hoxc13/Jaspar

Match Rank:3
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----TTACGAGGTC-
NAATTTTACGAGNTNN

RORA/MA0071.1/Jaspar

Match Rank:4
Score:0.69
Offset:1
Orientation:forward strand
Alignment:TTACGAGGTC-
-ATCAAGGTCA

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.66
Offset:5
Orientation:forward strand
Alignment:TTACGAGGTC-
-----AGGTCA

SMZ/MA0553.1/Jaspar

Match Rank:6
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TTACGAGGTC
GTACGAGG--

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:TTACGAGGTC--
--TCAAGGTCAN

PB0057.1_Rxra_1/Jaspar

Match Rank:8
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TTACGAGGTC------
NTNNNGGGGTCANGNNN

NR4A2/MA0160.1/Jaspar

Match Rank:9
Score:0.63
Offset:4
Orientation:forward strand
Alignment:TTACGAGGTC--
----AAGGTCAC

Esrrg/MA0643.1/Jaspar

Match Rank:10
Score:0.63
Offset:2
Orientation:forward strand
Alignment:TTACGAGGTC--
--TCAAGGTCAT