Information for 1-AMTGAAATTAYA (Motif 2)


Reverse Opposite:

p-value:1e-11
log p-value:-2.545e+01
Information Content per bp:1.652
Number of Target Sequences with motif166.0
Percentage of Target Sequences with motif6.92%
Number of Background Sequences with motif71.1
Percentage of Background Sequences with motif2.82%
Average Position of motif in Targets35.4 +/- 19.5bp
Average Position of motif in Background36.8 +/- 20.2bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0169.1_Sox15_2/Jaspar

Match Rank:1
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---AMTGAAATTAYA
TTGAATGAAATTCGA

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:2
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AMTGAAATTAYA
YTAATYNRATTA--

ems/dmmpmm(Bergman)/fly

Match Rank:3
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:AMTGAAATTAYA---
--TGTCATTANANTT

sd/dmmpmm(SeSiMCMC)/fly

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AMTGAAATTAYA
AAATGAAATTCGA

ara/dmmpmm(Noyes_hd)/fly

Match Rank:5
Score:0.60
Offset:4
Orientation:forward strand
Alignment:AMTGAAATTAYA--
----AAATAACAAA

PROP1/MA0715.1/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AMTGAAATTAYA
TAATTAAATTA--

PHOX2A/MA0713.1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AMTGAAATTAYA
TAATTAAATTA--

PH0022.1_Dlx3/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AMTGAAATTAYA----
NNNGGTAATTATNGNGN

Phox2b/MA0681.1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AMTGAAATTAYA
TAATTAAATTA--

Dll/dmmpmm(Noyes_hd)/fly

Match Rank:10
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:AMTGAAATTAYA-
---GTAATTANNN