Information for 2-AAGATGAAAA (Motif 3)


Reverse Opposite:

p-value:1e-10
log p-value:-2.433e+01
Information Content per bp:1.811
Number of Target Sequences with motif62.0
Percentage of Target Sequences with motif2.59%
Number of Background Sequences with motif10.2
Percentage of Background Sequences with motif0.41%
Average Position of motif in Targets35.0 +/- 17.8bp
Average Position of motif in Background33.6 +/- 16.2bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RLR1/RLR1_YPD/[](Harbison)/Yeast

Match Rank:1
Score:0.80
Offset:-1
Orientation:reverse strand
Alignment:-AAGATGAAAA-
AAAGAAGAAAAT

skn-1/MA0547.1/Jaspar

Match Rank:2
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---AAGATGAAAA--
AAAATGATGACAATT

pan/dmmpmm(Bergman)/fly

Match Rank:3
Score:0.72
Offset:0
Orientation:forward strand
Alignment:AAGATGAAAA-
AAGATCAAAGG

Tcf7/MA0769.1/Jaspar

Match Rank:4
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-AAGATGAAAA-
AAAGATCAAAGG

LEF1/MA0768.1/Jaspar

Match Rank:5
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-AAGATGAAAA----
AAAGATCAAAGGGTT

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:6
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:AAGATGAAAA
ATGATGCAAT

TCF7L2/MA0523.1/Jaspar

Match Rank:7
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-AAGATGAAAA---
AAAGATCAAAGGAA

vvl/dmmpmm(Down)/fly

Match Rank:8
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:AAGATGAAAA
--TATTAAAA

RLR1?/SacCer-Promoters/Homer

Match Rank:9
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-AAGATGAAAA-
AAAARRGAAAAW

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:10
Score:0.69
Offset:0
Orientation:forward strand
Alignment:AAGATGAAAA
MTGATGCAAT