Information for 1-GGCTGGGA (Motif 6)


Reverse Opposite:

p-value:1e-9
log p-value:-2.299e+01
Information Content per bp:1.477
Number of Target Sequences with motif396.0
Percentage of Target Sequences with motif16.51%
Number of Background Sequences with motif260.3
Percentage of Background Sequences with motif10.33%
Average Position of motif in Targets38.1 +/- 19.9bp
Average Position of motif in Background37.3 +/- 20.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SWI5/Literature(Harbison)/Yeast

Match Rank:1
Score:0.82
Offset:0
Orientation:forward strand
Alignment:GGCTGGGA
GGCTGA--

ACE2/MA0267.1/Jaspar

Match Rank:2
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:GGCTGGGA
TGCTGGT-

SWI5/MA0402.1/Jaspar

Match Rank:3
Score:0.78
Offset:0
Orientation:forward strand
Alignment:GGCTGGGA
TGCTGGTT

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-GGCTGGGA-
WDNCTGGGCA

CRZ1(MacIsaac)/Yeast

Match Rank:5
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--GGCTGGGA
GAGGCTG---

SWI5(MacIsaac)/Yeast

Match Rank:6
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GGCTGGGA
TGCTGGTT

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:7
Score:0.72
Offset:-7
Orientation:forward strand
Alignment:-------GGCTGGGA
GGGGCTYGKCTGGGA

PB0167.1_Sox13_2/Jaspar

Match Rank:8
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----GGCTGGGA----
GTATTGGGTGGGTAATT

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GGCTGGGA
NGCTN---

PB0029.1_Hic1_1/Jaspar

Match Rank:10
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----GGCTGGGA----
NGTAGGTTGGCATNNN