Information for 4-CCCAAAACCA (Motif 7)


Reverse Opposite:

p-value:1e-9
log p-value:-2.270e+01
Information Content per bp:1.756
Number of Target Sequences with motif42.0
Percentage of Target Sequences with motif1.75%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets34.3 +/- 19.4bp
Average Position of motif in Background46.2 +/- 11.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

pan/dmmpmm(Down)/fly

Match Rank:1
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CCCAAAACCA
---AAAAACA

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CCCAAAACCA
GCCACACCCA

grh/dmmpmm(Pollard)/fly

Match Rank:3
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CCCAAAACCA-
-ANAAAACCAG

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:4
Score:0.64
Offset:4
Orientation:forward strand
Alignment:CCCAAAACCA----
----AAACCACANN

grh/dmmpmm(SeSiMCMC)/fly

Match Rank:5
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:CCCAAAACCA-
----AAACCAG

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CCCAAAACCA-
GGCCACACCCAN

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:7
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CCCAAAACCA-----
---NWAACCACADNN

RUNX1/MA0002.2/Jaspar

Match Rank:8
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CCCAAAACCA-----
----AAACCACAGAN

Klf1/MA0493.1/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CCCAAAACCA
GGCCACACCCA

SeqBias: C/A-bias

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CCCAAAACCA
AAAAAAAAAA