Information for 7-CCTTGTCTCA (Motif 9)


Reverse Opposite:

p-value:1e-8
log p-value:-2.003e+01
Information Content per bp:1.796
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif1.46%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets30.5 +/- 20.5bp
Average Position of motif in Background27.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ARF1(ABI3/VP1)/Arabidopsis thaliana/AthaMap

Match Rank:1
Score:0.74
Offset:1
Orientation:forward strand
Alignment:CCTTGTCTCA--
-CTTGTCTCCCA

GCN4/GCN4_SM/121-GCN4(Harbison)/Yeast

Match Rank:2
Score:0.72
Offset:3
Orientation:forward strand
Alignment:CCTTGTCTCA
---TGACTCA

BAS1/BAS1_SM/2-BAS1(Harbison)/Yeast

Match Rank:3
Score:0.70
Offset:3
Orientation:forward strand
Alignment:CCTTGTCTCA
---TGACTC-

FOS::JUN/MA0099.2/Jaspar

Match Rank:4
Score:0.69
Offset:3
Orientation:forward strand
Alignment:CCTTGTCTCA
---TGACTCA

ARG81/MA0272.1/Jaspar

Match Rank:5
Score:0.69
Offset:2
Orientation:forward strand
Alignment:CCTTGTCTCA
--GTGACTCT

ARG81(MacIsaac)/Yeast

Match Rank:6
Score:0.68
Offset:2
Orientation:forward strand
Alignment:CCTTGTCTCA
--GTGACTCN

GCN4(MacIsaac)/Yeast

Match Rank:7
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CCTTGTCTCA
--ATGACTCA

AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CCTTGTCTCA--
--ATGACTCATC

BAS1(MacIsaac)/Yeast

Match Rank:9
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CCTTGTCTCA---
---TGACTCTTNC

Gata4/MA0482.1/Jaspar

Match Rank:10
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CCTTGTCTCA-
TCTTATCTCCC