Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 2401)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 2526)	% of Background Sequences with Motif
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-2	-6.282e+00	0.7233	73.0	3.04%	44.2	1.75%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-2	-6.070e+00	0.7233	61.0	2.54%	35.4	1.41%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-2	-5.432e+00	0.7233	27.0	1.13%	11.8	0.47%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-2	-5.280e+00	0.7233	19.0	0.79%	6.3	0.25%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e-2	-5.139e+00	0.7233	457.0	19.06%	410.8	16.31%
SeqBias: CA-repeat	CACACACACA	1e-2	-4.721e+00	0.7233	599.0	24.98%	556.2	22.08%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-2	-4.626e+00	0.7233	16.0	0.67%	5.7	0.23%
Tal1	CATCTG	1e-1	-4.203e+00	0.7233	123.0	5.13%	96.9	3.85%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-1	-4.012e+00	0.7783	26.0	1.08%	13.3	0.53%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-1	-4.010e+00	0.7783	209.0	8.72%	178.6	7.09%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-1	-3.863e+00	0.7783	62.0	2.59%	43.9	1.74%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-1	-3.750e+00	0.7783	74.0	3.09%	54.4	2.16%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-1	-3.732e+00	0.7783	106.0	4.42%	83.8	3.33%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-1	-3.720e+00	0.7783	354.0	14.76%	322.5	12.80%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-1	-3.608e+00	0.7783	115.0	4.80%	92.6	3.68%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-1	-3.509e+00	0.7783	425.0	17.72%	395.6	15.70%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-1	-3.498e+00	0.7783	15.0	0.63%	7.0	0.28%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-1	-3.429e+00	0.7783	19.0	0.79%	9.2	0.36%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-1	-3.302e+00	0.7783	129.0	5.38%	107.8	4.28%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-1	-3.136e+00	0.8407	73.0	3.04%	56.9	2.26%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-1	-3.130e+00	0.8407	63.0	2.63%	47.8	1.90%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-1	-3.108e+00	0.8407	64.0	2.67%	48.6	1.93%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e-1	-3.042e+00	0.8407	28.0	1.17%	17.7	0.70%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-3.025e+00	0.8407	58.0	2.42%	43.5	1.73%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-1	-2.896e+00	0.8551	149.0	6.21%	129.3	5.13%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-1	-2.885e+00	0.8551	127.0	5.30%	108.8	4.32%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-1	-2.870e+00	0.8551	46.0	1.92%	33.3	1.32%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-1	-2.832e+00	0.8551	204.0	8.51%	184.0	7.30%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-1	-2.821e+00	0.8551	16.0	0.67%	8.7	0.35%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-1	-2.785e+00	0.8551	71.0	2.96%	56.8	2.26%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-1	-2.712e+00	0.8551	28.0	1.17%	18.2	0.72%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e-1	-2.691e+00	0.8551	13.0	0.54%	6.8	0.27%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-1	-2.684e+00	0.8551	95.0	3.96%	79.6	3.16%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-2.621e+00	0.8551	30.0	1.25%	20.7	0.82%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e-1	-2.607e+00	0.8551	162.0	6.76%	144.9	5.75%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-1	-2.596e+00	0.8551	24.0	1.00%	15.1	0.60%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-1	-2.585e+00	0.8551	10.0	0.42%	4.3	0.17%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-1	-2.581e+00	0.8551	31.0	1.29%	21.9	0.87%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-1	-2.571e+00	0.8551	14.0	0.58%	7.7	0.30%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-1	-2.476e+00	0.8551	54.0	2.25%	42.6	1.69%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-1	-2.320e+00	0.9275	40.0	1.67%	30.9	1.23%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-2.314e+00	0.9275	12.0	0.50%	6.7	0.27%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-2.280e+00	0.9275	24.0	1.00%	16.3	0.65%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-2.280e+00	0.9275	90.0	3.75%	77.0	3.06%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-2.269e+00	0.9275	121.0	5.05%	107.9	4.28%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-2.251e+00	0.9275	18.0	0.75%	12.0	0.48%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-2.204e+00	0.9275	26.0	1.08%	18.8	0.75%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-2.155e+00	0.9275	3.0	0.13%	0.0	0.00%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-2.155e+00	0.9275	3.0	0.13%	0.8	0.03%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-2.155e+00	0.9275	3.0	0.13%	0.8	0.03%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-2.155e+00	0.9275	3.0	0.13%	0.0	0.00%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e0	-2.072e+00	0.9370	108.0	4.50%	96.3	3.82%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-2.066e+00	0.9370	110.0	4.59%	98.2	3.90%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-2.057e+00	0.9370	43.0	1.79%	34.8	1.38%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-2.050e+00	0.9370	6.0	0.25%	2.7	0.11%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-2.050e+00	0.9370	6.0	0.25%	2.3	0.09%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-2.047e+00	0.9370	10.0	0.42%	5.1	0.20%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-2.047e+00	0.9370	10.0	0.42%	5.9	0.23%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.997e+00	0.9370	24.0	1.00%	17.8	0.71%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-1.997e+00	0.9370	24.0	1.00%	17.5	0.70%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.997e+00	0.9370	24.0	1.00%	17.2	0.68%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-1.977e+00	0.9370	189.0	7.88%	177.9	7.06%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-1.962e+00	0.9370	72.0	3.00%	62.7	2.49%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-1.951e+00	0.9370	74.0	3.09%	64.3	2.55%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-1.951e+00	0.9370	74.0	3.09%	64.7	2.57%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-1.933e+00	0.9370	119.0	4.96%	108.3	4.30%
SeqBias: CG bias	SSSSSSSSSS	1e0	-1.880e+00	0.9370	671.0	27.98%	671.4	26.65%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.860e+00	0.9370	382.0	15.93%	375.0	14.89%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-1.845e+00	0.9370	107.0	4.46%	97.5	3.87%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.844e+00	0.9370	108.0	4.50%	98.2	3.90%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.842e+00	0.9370	68.0	2.84%	59.4	2.36%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-1.831e+00	0.9370	230.0	9.59%	220.6	8.76%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.818e+00	0.9370	21.0	0.88%	15.5	0.62%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.762e+00	0.9370	92.0	3.84%	83.5	3.32%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.753e+00	0.9370	37.0	1.54%	30.2	1.20%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-1.729e+00	0.9370	15.0	0.63%	10.4	0.41%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.717e+00	0.9370	155.0	6.46%	146.7	5.83%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.694e+00	0.9370	43.0	1.79%	36.1	1.43%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.688e+00	0.9370	27.0	1.13%	21.0	0.83%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.665e+00	0.9370	47.0	1.96%	40.7	1.61%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.661e+00	0.9370	17.0	0.71%	12.0	0.48%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.633e+00	0.9370	18.0	0.75%	13.9	0.55%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-1.631e+00	0.9370	114.0	4.75%	106.9	4.24%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.609e+00	0.9370	33.0	1.38%	28.0	1.11%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.599e+00	0.9370	34.0	1.42%	29.0	1.15%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.586e+00	0.9370	20.0	0.83%	15.9	0.63%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.569e+00	0.9370	72.0	3.00%	65.3	2.59%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-1.541e+00	0.9418	94.0	3.92%	87.2	3.46%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.537e+00	0.9418	103.0	4.30%	96.9	3.85%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.517e+00	0.9431	46.0	1.92%	40.9	1.62%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-1.504e+00	0.9447	25.0	1.04%	20.5	0.81%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.487e+00	0.9511	54.0	2.25%	49.0	1.94%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.476e+00	0.9511	162.0	6.76%	156.1	6.20%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.469e+00	0.9511	6.0	0.25%	3.5	0.14%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.464e+00	0.9511	14.0	0.58%	10.9	0.43%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.453e+00	0.9511	30.0	1.25%	25.8	1.02%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.453e+00	0.9511	30.0	1.25%	25.9	1.03%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.439e+00	0.9511	15.0	0.63%	11.2	0.45%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.424e+00	0.9511	34.0	1.42%	29.9	1.19%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-1.386e+00	0.9680	147.0	6.13%	142.3	5.65%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.361e+00	0.9821	187.0	7.80%	183.9	7.30%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.356e+00	0.9821	20.0	0.83%	16.8	0.67%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.347e+00	0.9821	8.0	0.33%	5.0	0.20%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.347e+00	0.9821	8.0	0.33%	5.4	0.21%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.347e+00	0.9821	8.0	0.33%	5.6	0.22%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.345e+00	0.9821	65.0	2.71%	60.8	2.42%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-1.270e+00	1.0000	169.0	7.05%	166.7	6.62%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.241e+00	1.0000	46.0	1.92%	42.1	1.67%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.236e+00	1.0000	67.0	2.79%	63.6	2.52%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.224e+00	1.0000	3.0	0.13%	1.1	0.04%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.224e+00	1.0000	3.0	0.13%	1.2	0.05%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.218e+00	1.0000	13.0	0.54%	10.7	0.43%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.204e+00	1.0000	14.0	0.58%	11.5	0.46%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-1.204e+00	1.0000	14.0	0.58%	11.4	0.45%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.160e+00	1.0000	19.0	0.79%	16.8	0.67%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.137e+00	1.0000	70.0	2.92%	67.8	2.69%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.137e+00	1.0000	24.0	1.00%	21.8	0.87%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.137e+00	1.0000	4.0	0.17%	3.0	0.12%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.137e+00	1.0000	4.0	0.17%	2.1	0.08%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.135e+00	1.0000	68.0	2.84%	65.7	2.61%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.132e+00	1.0000	65.0	2.71%	62.4	2.48%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.131e+00	1.0000	64.0	2.67%	61.4	2.44%
SeqBias: TA-repeat	TATATATATA	1e0	-1.131e+00	1.0000	670.0	27.94%	688.4	27.33%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-1.126e+00	1.0000	229.0	9.55%	230.4	9.15%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.126e+00	1.0000	29.0	1.21%	26.7	1.06%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.121e+00	1.0000	33.0	1.38%	30.7	1.22%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-1.059e+00	1.0000	6.0	0.25%	4.4	0.18%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.041e+00	1.0000	68.0	2.84%	66.0	2.62%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.038e+00	1.0000	7.0	0.29%	5.2	0.21%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-1.023e+00	1.0000	8.0	0.33%	6.9	0.27%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.023e+00	1.0000	8.0	0.33%	6.7	0.27%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-1.012e+00	1.0000	9.0	0.38%	7.5	0.30%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-9.972e-01	1.0000	11.0	0.46%	9.5	0.38%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-9.922e-01	1.0000	12.0	0.50%	10.5	0.42%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-9.922e-01	1.0000	12.0	0.50%	10.9	0.43%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-9.853e-01	1.0000	14.0	0.58%	12.1	0.48%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-9.853e-01	1.0000	14.0	0.58%	12.7	0.50%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-9.792e-01	1.0000	25.0	1.04%	23.5	0.93%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-9.792e-01	1.0000	25.0	1.04%	23.2	0.92%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-9.779e-01	1.0000	21.0	0.88%	19.5	0.77%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-9.738e-01	1.0000	174.0	7.26%	176.9	7.02%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-9.344e-01	1.0000	154.0	6.42%	156.9	6.23%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-9.302e-01	1.0000	58.0	2.42%	57.3	2.27%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-9.278e-01	1.0000	57.0	2.38%	56.5	2.24%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-9.208e-01	1.0000	54.0	2.25%	54.0	2.14%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-9.087e-01	1.0000	49.0	2.04%	48.2	1.91%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-9.050e-01	1.0000	82.0	3.42%	82.7	3.28%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-8.986e-01	1.0000	45.0	1.88%	44.7	1.78%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-8.633e-01	1.0000	32.0	1.33%	31.6	1.25%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-8.511e-01	1.0000	61.0	2.54%	61.3	2.43%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-8.450e-01	1.0000	26.0	1.08%	25.9	1.03%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-8.441e-01	1.0000	2339.0	97.54%	2455.0	97.45%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-8.352e-01	1.0000	23.0	0.96%	22.4	0.89%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-8.339e-01	1.0000	55.0	2.29%	55.5	2.20%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-8.294e-01	1.0000	179.0	7.46%	184.4	7.32%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-8.249e-01	1.0000	20.0	0.83%	19.8	0.79%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-8.249e-01	1.0000	20.0	0.83%	19.5	0.77%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-8.213e-01	1.0000	19.0	0.79%	18.2	0.72%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-8.176e-01	1.0000	18.0	0.75%	17.0	0.67%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-8.172e-01	1.0000	126.0	5.25%	129.6	5.15%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-7.932e-01	1.0000	12.0	0.50%	11.0	0.44%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e0	-7.907e-01	1.0000	314.0	13.09%	326.0	12.94%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-7.839e-01	1.0000	10.0	0.42%	9.1	0.36%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-7.789e-01	1.0000	9.0	0.38%	8.1	0.32%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-7.774e-01	1.0000	38.0	1.58%	38.3	1.52%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-7.736e-01	1.0000	8.0	0.33%	7.0	0.28%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-7.621e-01	1.0000	6.0	0.25%	5.2	0.21%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-7.495e-01	1.0000	99.0	4.13%	102.4	4.06%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-7.485e-01	1.0000	4.0	0.17%	3.0	0.12%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-7.372e-01	1.0000	51.0	2.13%	52.1	2.07%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-7.308e-01	1.0000	2.0	0.08%	1.3	0.05%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-7.308e-01	1.0000	2.0	0.08%	1.1	0.04%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-7.308e-01	1.0000	2.0	0.08%	1.1	0.04%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-7.306e-01	1.0000	27.0	1.13%	27.1	1.08%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-7.298e-01	1.0000	113.0	4.71%	118.0	4.68%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-7.214e-01	1.0000	89.0	3.71%	92.6	3.68%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-7.181e-01	1.0000	1.0	0.04%	0.0	0.00%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-7.181e-01	1.0000	1.0	0.04%	0.8	0.03%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-7.181e-01	1.0000	1.0	0.04%	0.0	0.00%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-7.181e-01	1.0000	1.0	0.04%	0.0	0.00%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-7.126e-01	1.0000	86.0	3.59%	89.6	3.56%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-7.090e-01	1.0000	307.0	12.80%	321.2	12.75%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-7.057e-01	1.0000	485.0	20.23%	508.2	20.17%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-6.922e-01	1.0000	20.0	0.83%	20.6	0.82%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-6.816e-01	1.0000	76.0	3.17%	79.8	3.17%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-6.791e-01	1.0000	56.0	2.34%	58.5	2.32%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-6.767e-01	1.0000	113.0	4.71%	118.1	4.69%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-6.753e-01	1.0000	55.0	2.29%	57.2	2.27%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-6.653e-01	1.0000	1963.0	81.86%	2062.7	81.88%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-6.627e-01	1.0000	591.0	24.65%	621.5	24.67%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-6.569e-01	1.0000	15.0	0.63%	15.8	0.63%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-6.472e-01	1.0000	84.0	3.50%	88.5	3.51%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-6.325e-01	1.0000	28.0	1.17%	29.5	1.17%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-6.265e-01	1.0000	27.0	1.13%	29.0	1.15%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-6.247e-01	1.0000	43.0	1.79%	45.5	1.81%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-6.169e-01	1.0000	92.0	3.84%	97.4	3.87%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-6.128e-01	1.0000	179.0	7.46%	189.3	7.51%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-6.054e-01	1.0000	55.0	2.29%	58.6	2.33%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-6.045e-01	1.0000	193.0	8.05%	204.3	8.11%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-6.013e-01	1.0000	87.0	3.63%	93.0	3.69%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-6.012e-01	1.0000	54.0	2.25%	57.7	2.29%
SeqBias: GA-repeat	GAGAGAGAGA	1e0	-5.869e-01	1.0000	740.0	30.86%	781.1	31.01%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-5.812e-01	1.0000	8.0	0.33%	8.2	0.33%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-5.812e-01	1.0000	8.0	0.33%	8.8	0.35%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-5.777e-01	1.0000	20.0	0.83%	21.3	0.84%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-5.777e-01	1.0000	20.0	0.83%	21.8	0.87%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-5.748e-01	1.0000	95.0	3.96%	101.0	4.01%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-5.729e-01	1.0000	33.0	1.38%	35.9	1.43%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-5.723e-01	1.0000	2292.0	95.58%	2409.2	95.64%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-5.650e-01	1.0000	7.0	0.29%	7.7	0.31%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-5.650e-01	1.0000	7.0	0.29%	7.1	0.28%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-5.600e-01	1.0000	293.0	12.22%	311.6	12.37%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-5.559e-01	1.0000	137.0	5.71%	146.3	5.81%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-5.348e-01	1.0000	27.0	1.13%	29.6	1.18%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-5.333e-01	1.0000	507.0	21.14%	538.5	21.38%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-5.279e-01	1.0000	52.0	2.17%	56.2	2.23%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.234e-01	1.0000	5.0	0.21%	5.6	0.22%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.234e-01	1.0000	5.0	0.21%	5.6	0.22%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-5.211e-01	1.0000	14.0	0.58%	15.4	0.61%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-5.205e-01	1.0000	25.0	1.04%	27.7	1.10%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-5.201e-01	1.0000	64.0	2.67%	70.0	2.78%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-5.094e-01	1.0000	13.0	0.54%	14.6	0.58%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-5.094e-01	1.0000	13.0	0.54%	14.7	0.58%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-5.094e-01	1.0000	13.0	0.54%	14.7	0.59%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-5.062e-01	1.0000	103.0	4.30%	111.2	4.41%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-5.050e-01	1.0000	23.0	0.96%	26.0	1.03%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-5.034e-01	1.0000	430.0	17.93%	458.6	18.20%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-4.968e-01	1.0000	12.0	0.50%	13.9	0.55%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-4.950e-01	1.0000	4.0	0.17%	4.1	0.16%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-4.950e-01	1.0000	4.0	0.17%	4.4	0.17%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-4.832e-01	1.0000	11.0	0.46%	12.1	0.48%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-4.827e-01	1.0000	68.0	2.84%	74.7	2.96%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-4.795e-01	1.0000	20.0	0.83%	22.3	0.89%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-4.770e-01	1.0000	151.0	6.30%	163.2	6.48%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-4.749e-01	1.0000	66.0	2.75%	72.6	2.88%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-4.747e-01	1.0000	165.0	6.88%	178.5	7.08%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	-4.710e-01	1.0000	1786.0	74.48%	1885.5	74.85%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-4.710e-01	1.0000	65.0	2.71%	71.3	2.83%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-4.682e-01	1.0000	10.0	0.42%	11.6	0.46%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-4.682e-01	1.0000	10.0	0.42%	11.7	0.46%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-4.573e-01	1.0000	3.0	0.13%	3.2	0.13%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-4.517e-01	1.0000	9.0	0.38%	11.0	0.44%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-4.502e-01	1.0000	17.0	0.71%	19.6	0.78%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-4.377e-01	1.0000	57.0	2.38%	63.4	2.51%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-4.279e-01	1.0000	15.0	0.63%	17.9	0.71%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-4.277e-01	1.0000	91.0	3.79%	100.6	3.99%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-4.140e-01	1.0000	22.0	0.92%	25.8	1.03%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-4.125e-01	1.0000	7.0	0.29%	8.6	0.34%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-3.944e-01	1.0000	105.0	4.38%	116.9	4.64%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-3.889e-01	1.0000	91.0	3.79%	101.3	4.02%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-3.887e-01	1.0000	103.0	4.30%	115.0	4.56%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-3.858e-01	1.0000	19.0	0.79%	22.7	0.90%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-3.756e-01	1.0000	18.0	0.75%	21.8	0.87%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-3.755e-01	1.0000	44.0	1.83%	50.8	2.02%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-3.666e-01	1.0000	211.0	8.80%	231.9	9.21%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-3.604e-01	1.0000	5.0	0.21%	6.6	0.26%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-3.604e-01	1.0000	5.0	0.21%	6.4	0.26%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-3.517e-01	1.0000	23.0	0.96%	27.6	1.10%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-3.443e-01	1.0000	147.0	6.13%	163.1	6.48%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-3.422e-01	1.0000	38.0	1.58%	44.0	1.75%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-3.323e-01	1.0000	74.0	3.09%	84.7	3.36%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-3.303e-01	1.0000	36.0	1.50%	42.5	1.69%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-3.292e-01	1.0000	14.0	0.58%	17.0	0.68%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-3.271e-01	1.0000	44.0	1.83%	51.2	2.03%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-3.265e-01	1.0000	4.0	0.17%	5.9	0.23%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-3.248e-01	1.0000	62.0	2.59%	71.3	2.83%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-3.179e-01	1.0000	34.0	1.42%	40.5	1.61%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-3.179e-01	1.0000	34.0	1.42%	40.3	1.60%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-3.115e-01	1.0000	33.0	1.38%	39.4	1.57%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-3.115e-01	1.0000	33.0	1.38%	40.0	1.59%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-3.074e-01	1.0000	25.0	1.04%	30.8	1.22%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-3.074e-01	1.0000	154.0	6.42%	172.6	6.85%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-3.044e-01	1.0000	1.0	0.04%	1.8	0.07%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-3.044e-01	1.0000	1.0	0.04%	2.0	0.08%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-3.031e-01	1.0000	66.0	2.75%	76.3	3.03%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-3.003e-01	1.0000	95.0	3.96%	108.1	4.29%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-2.907e-01	1.0000	102.0	4.25%	116.4	4.62%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-2.899e-01	1.0000	257.0	10.72%	284.3	11.28%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-2.848e-01	1.0000	2243.0	93.54%	2367.9	94.00%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-2.838e-01	1.0000	3.0	0.13%	4.9	0.19%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-2.838e-01	1.0000	3.0	0.13%	4.8	0.19%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-2.838e-01	1.0000	3.0	0.13%	4.4	0.17%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-2.739e-01	1.0000	106.0	4.42%	121.4	4.82%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-2.709e-01	1.0000	15.0	0.63%	19.1	0.76%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-2.683e-01	1.0000	41.0	1.71%	49.5	1.96%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-2.646e-01	1.0000	123.0	5.13%	140.5	5.58%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-2.630e-01	1.0000	40.0	1.67%	48.4	1.92%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-2.587e-01	1.0000	14.0	0.58%	18.6	0.74%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-2.550e-01	1.0000	46.0	1.92%	55.4	2.20%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-2.502e-01	1.0000	45.0	1.88%	54.8	2.18%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-2.462e-01	1.0000	5.0	0.21%	7.9	0.31%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-2.386e-01	1.0000	29.0	1.21%	36.6	1.45%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-2.344e-01	1.0000	8.0	0.33%	11.2	0.44%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-2.271e-01	1.0000	2.0	0.08%	3.3	0.13%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-2.254e-01	1.0000	146.0	6.09%	167.7	6.66%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-2.098e-01	1.0000	37.0	1.54%	47.0	1.86%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-2.066e-01	1.0000	43.0	1.79%	53.5	2.12%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-2.062e-01	1.0000	81.0	3.38%	96.4	3.83%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-2.031e-01	1.0000	24.0	1.00%	31.1	1.23%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-2.029e-01	1.0000	10.0	0.42%	14.8	0.59%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.973e-01	1.0000	141.0	5.88%	164.0	6.51%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.869e-01	1.0000	9.0	0.38%	13.0	0.52%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.869e-01	1.0000	9.0	0.38%	13.9	0.55%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.772e-01	1.0000	12.0	0.50%	17.4	0.69%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.756e-01	1.0000	3.0	0.13%	5.6	0.22%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.723e-01	1.0000	273.0	11.38%	309.5	12.29%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.698e-01	1.0000	8.0	0.33%	12.7	0.50%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.679e-01	1.0000	83.0	3.46%	100.1	3.97%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.590e-01	1.0000	28.0	1.17%	37.6	1.49%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-1.507e-01	1.0000	10.0	0.42%	15.8	0.63%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.478e-01	1.0000	168.0	7.01%	196.7	7.81%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.443e-01	1.0000	1.0	0.04%	2.2	0.09%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-1.423e-01	1.0000	53.0	2.21%	67.2	2.67%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.389e-01	1.0000	4.0	0.17%	7.3	0.29%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.389e-01	1.0000	4.0	0.17%	7.8	0.31%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-1.356e-01	1.0000	34.0	1.42%	45.4	1.80%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.340e-01	1.0000	12.0	0.50%	18.9	0.75%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.339e-01	1.0000	99.0	4.13%	120.9	4.80%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-1.298e-01	1.0000	38.0	1.58%	50.2	1.99%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.289e-01	1.0000	201.0	8.38%	234.6	9.31%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-1.221e-01	1.0000	320.0	13.34%	365.6	14.51%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.218e-01	1.0000	8.0	0.33%	13.8	0.55%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.199e-01	1.0000	295.0	12.30%	338.0	13.42%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.194e-01	1.0000	14.0	0.58%	21.2	0.84%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.179e-01	1.0000	220.0	9.17%	256.9	10.20%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.152e-01	1.0000	21.0	0.88%	30.2	1.20%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-1.138e-01	1.0000	135.0	5.63%	162.9	6.47%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.132e-01	1.0000	160.0	6.67%	190.3	7.56%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.080e-01	1.0000	3.0	0.13%	6.8	0.27%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-1.064e-01	1.0000	7.0	0.29%	12.6	0.50%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-9.876e-02	1.0000	9.0	0.38%	15.1	0.60%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-9.876e-02	1.0000	9.0	0.38%	15.1	0.60%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-9.819e-02	1.0000	81.0	3.38%	102.3	4.06%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-9.067e-02	1.0000	14.0	0.58%	22.8	0.91%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-8.925e-02	1.0000	4.0	0.17%	8.7	0.35%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-8.534e-02	1.0000	32.0	1.33%	45.2	1.79%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-8.463e-02	1.0000	107.0	4.46%	133.3	5.29%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-8.320e-02	1.0000	238.0	9.92%	280.7	11.14%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-8.245e-02	1.0000	67.0	2.79%	87.3	3.47%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-7.625e-02	1.0000	48.0	2.00%	65.1	2.58%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-7.347e-02	1.0000	2.0	0.08%	5.4	0.22%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-6.881e-02	1.0000	36.0	1.50%	51.5	2.04%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-6.827e-02	1.0000	14.0	0.58%	23.7	0.94%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-6.341e-02	1.0000	74.0	3.09%	98.0	3.89%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-6.054e-02	1.0000	182.0	7.59%	221.6	8.80%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-5.846e-02	1.0000	107.0	4.46%	136.2	5.41%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-5.814e-02	1.0000	88.0	3.67%	114.6	4.55%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-5.673e-02	1.0000	4.0	0.17%	9.4	0.37%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-4.901e-02	1.0000	55.0	2.29%	76.6	3.04%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-4.822e-02	1.0000	5.0	0.21%	11.8	0.47%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-4.102e-02	1.0000	46.0	1.92%	66.1	2.62%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-4.098e-02	1.0000	169.0	7.05%	210.4	8.35%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-4.074e-02	1.0000	6.0	0.25%	13.2	0.53%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-3.614e-02	1.0000	229.0	9.55%	279.8	11.11%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-3.586e-02	1.0000	1.0	0.04%	4.4	0.17%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-3.567e-02	1.0000	4.0	0.17%	10.1	0.40%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-3.509e-02	1.0000	9.0	0.38%	18.5	0.73%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-2.863e-02	1.0000	161.0	6.71%	204.1	8.10%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-2.043e-02	1.0000	2292.0	95.58%	2435.4	96.68%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.408e-02	1.0000	3.0	0.13%	10.5	0.42%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-1.110e-02	1.0000	38.0	1.58%	62.3	2.47%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-9.267e-03	1.0000	1.0	0.04%	6.2	0.25%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-7.195e-03	1.0000	186.0	7.76%	244.0	9.69%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-5.053e-03	1.0000	194.0	8.09%	256.7	10.19%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-4.730e-03	1.0000	1.0	0.04%	7.0	0.28%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-2.376e-03	1.0000	43.0	1.79%	75.0	2.98%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-4.820e-04	1.0000	117.0	4.88%	178.6	7.09%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.100e-04	1.0000	95.0	3.96%	157.8	6.27%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-0.000e+00	1.0000	0.0	0.00%	2.2	0.09%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-0.000e+00	1.0000	0.0	0.00%	2.0	0.08%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-0.000e+00	1.0000	0.0	0.00%	2.6	0.10%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-0.000e+00	1.0000	0.0	0.00%	2.8	0.11%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-0.000e+00	1.0000	0.0	0.00%	1.2	0.05%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-0.000e+00	1.0000	0.0	0.00%	2.0	0.08%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-0.000e+00	1.0000	0.0	0.00%	1.6	0.06%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-0.000e+00	1.0000	0.0	0.00%	1.1	0.05%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-0.000e+00	1.0000	0.0	0.00%	1.4	0.06%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-0.000e+00	1.0000	0.0	0.00%	4.7	0.19%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	2398.0	100.00%	2519.1	100.00%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%