Information for 14-CACCGTGCCC (Motif 19)


Reverse Opposite:

p-value:1e-11
log p-value:-2.546e+01
Information Content per bp:1.845
Number of Target Sequences with motif67.0
Percentage of Target Sequences with motif4.30%
Number of Background Sequences with motif10.6
Percentage of Background Sequences with motif0.69%
Average Position of motif in Targets33.6 +/- 18.3bp
Average Position of motif in Background33.8 +/- 10.4bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL006.1_BREu/Jaspar

Match Rank:1
Score:0.71
Offset:1
Orientation:forward strand
Alignment:CACCGTGCCC
-AGCGCGCC-

PHD1(MacIsaac)/Yeast

Match Rank:2
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:CACCGTGCCC
----GTGCCT

HIC2/MA0738.1/Jaspar

Match Rank:3
Score:0.68
Offset:4
Orientation:forward strand
Alignment:CACCGTGCCC---
----ATGCCCACC

PB0039.1_Klf7_1/Jaspar

Match Rank:4
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CACCGTGCCC----
TCGACCCCGCCCCTAT

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----CACCGTGCCC
NAGGTCACNNTGACC

ESR2/MA0258.2/Jaspar

Match Rank:6
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----CACCGTGCCC-
AGGTCACCCTGACCT

THAP1/MA0597.1/Jaspar

Match Rank:7
Score:0.63
Offset:4
Orientation:forward strand
Alignment:CACCGTGCCC---
----CTGCCCGCA

HAC1/Literature(Harbison)/Yeast

Match Rank:8
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CACCGTGCCC
GGACAGCGTGTC-

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CACCGTGCCC-
TGGCACCATGCCAA

PB0133.1_Hic1_2/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CACCGTGCCC------
GGGTGTGCCCAAAAGG