Information for 9-TCTYGCTCTGTC (Motif 20)


Reverse Opposite:

p-value:1e-10
log p-value:-2.396e+01
Information Content per bp:1.724
Number of Target Sequences with motif62.0
Percentage of Target Sequences with motif3.98%
Number of Background Sequences with motif9.9
Percentage of Background Sequences with motif0.64%
Average Position of motif in Targets40.8 +/- 17.7bp
Average Position of motif in Background45.5 +/- 14.1bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

GAGA-repeat/SacCer-Promoters/Homer

Match Rank:1
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---TCTYGCTCTGTC
CTYTCTYTCTCTCTC

eor-1/MA0543.1/Jaspar

Match Rank:2
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--TCTYGCTCTGTC-
TCTCTGCGTCTCTNN

SeqBias: GA-repeat

Match Rank:3
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TCTYGCTCTGTC
TCTCTCTCTC--

Trl/dmmpmm(SeSiMCMC)/fly

Match Rank:4
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TCTYGCTCTGTC
TTGCTCTCTCTCTC

Trl/dmmpmm(Down)/fly

Match Rank:5
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TCTYGCTCTGTC
GCTCTCTCTCTC

Trl/dmmpmm(Pollard)/fly

Match Rank:6
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:TCTYGCTCTGTC
--TTGCTCTCTC

Trl/MA0205.1/Jaspar

Match Rank:7
Score:0.65
Offset:2
Orientation:forward strand
Alignment:TCTYGCTCTGTC
--TTGCTCTCTC

Trl/dmmpmm(Bigfoot)/fly

Match Rank:8
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----TCTYGCTCTGTC
TTNCTCTCTCTCT---

GAGA-repeat/Arabidopsis-Promoters/Homer

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TCTYGCTCTGTC
CTCTCTCTCY---

PB0139.1_Irf5_2/Jaspar

Match Rank:10
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----TCTYGCTCTGTC
NNAATTCTCGNTNAN--