Information for 23-TAAATCATGC (Motif 25)


Reverse Opposite:

p-value:1e-6
log p-value:-1.486e+01
Information Content per bp:1.662
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif2.18%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif0.31%
Average Position of motif in Targets34.0 +/- 18.5bp
Average Position of motif in Background39.2 +/- 18.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9/MA0485.1/Jaspar

Match Rank:1
Score:0.73
Offset:-5
Orientation:forward strand
Alignment:-----TAAATCATGC
GGCCATAAATCAC--

PB0176.1_Sox5_2/Jaspar

Match Rank:2
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---TAAATCATGC--
NNCTNAATTATGANN

HAT1/MA1024.1/Jaspar

Match Rank:3
Score:0.71
Offset:0
Orientation:forward strand
Alignment:TAAATCATGC
CCAATCATTA

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:4
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----TAAATCATGC
GGCCATAAATCA---

eve/dmmpmm(Down)/fly

Match Rank:5
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:TAAATCATGC
-AAATNAT--

Hoxa9/MA0594.1/Jaspar

Match Rank:6
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----TAAATCATGC
GCCATAAATCA---

POU4F1/MA0790.1/Jaspar

Match Rank:7
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--TAAATCATGC--
CATTAATTATTCAT

ATHB-7/MA0954.1/Jaspar

Match Rank:8
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TAAATCATGC
TCAATCATTG

ap/dmmpmm(Bigfoot)/fly

Match Rank:9
Score:0.69
Offset:2
Orientation:forward strand
Alignment:TAAATCATGC
--AATNAT--

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:10
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----TAAATCATGC
GGCCATAAATCA---