Information for 3-GAGGCTGAGGTK (Motif 4)


Reverse Opposite:

p-value:1e-19
log p-value:-4.477e+01
Information Content per bp:1.793
Number of Target Sequences with motif258.0
Percentage of Target Sequences with motif16.56%
Number of Background Sequences with motif95.2
Percentage of Background Sequences with motif6.23%
Average Position of motif in Targets36.9 +/- 18.3bp
Average Position of motif in Background32.8 +/- 22.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.61
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CRZ1(MacIsaac)/Yeast

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GAGGCTGAGGTK
GAGGCTG-----

ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GAGGCTGAGGTK
ACAGGATGTGGT-

CRZ1/MA0285.1/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GAGGCTGAGGTK
GTGGCTNNG---

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GAGGCTGAGGTK
GAGSCCGAGC--

Zfx/MA0146.2/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GAGGCTGAGGTK--
CAGGCCNNGGCCNN

POL003.1_GC-box/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GAGGCTGAGGTK
AGGGGGCGGGGCTG

CHA4/MA0283.1/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GAGGCTGAGGTK
--GGCGGAGA--

Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GAGGCTGAGGTK
--GGGGGGGG--

bZIP910(2)(bZIP)/Antirrhinum majus/AthaMap

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GAGGCTGAGGTK
GGGTGCTGACGT-

SP1/MA0079.3/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GAGGCTGAGGTK
GGGGGCGGGGC--