Information for 8-GMTCACGS (Motif 6)


Reverse Opposite:

p-value:1e-16
log p-value:-3.822e+01
Information Content per bp:1.805
Number of Target Sequences with motif137.0
Percentage of Target Sequences with motif8.79%
Number of Background Sequences with motif32.7
Percentage of Background Sequences with motif2.14%
Average Position of motif in Targets35.6 +/- 20.1bp
Average Position of motif in Background35.9 +/- 19.9bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RTG3/Literature(Harbison)/Yeast

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GMTCACGS
GGTCAC--

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:2
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:GMTCACGS-
---CACGCA

Mitf/MA0620.1/Jaspar

Match Rank:3
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GMTCACGS--
GGTCACGTGG

GATA15/MA1016.1/Jaspar

Match Rank:4
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GMTCACGS
NNGATCANN-

Pax2/MA0067.1/Jaspar

Match Rank:5
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GMTCACGS
AGTCACGC

hkb/MA0450.1/Jaspar

Match Rank:6
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:GMTCACGS---
--TCACGCCCC

ZmHOX2a(2)(HD-HOX)/Zea mays/AthaMap

Match Rank:7
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GMTCACGS
CAGATCA---

prd/dmmpmm(Noyes)/fly

Match Rank:8
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GMTCACGS-
AATCCGTCACGCT

hkb/dmmpmm(Noyes)/fly

Match Rank:9
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GMTCACGS----
CNTCACGCCCCC

PB0140.1_Irf6_2/Jaspar

Match Rank:10
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GMTCACGS----
ACCACTCTCGGTCAC