Information for 7-RTTGCTTGAA (Motif 8)


Reverse Opposite:

p-value:1e-15
log p-value:-3.455e+01
Information Content per bp:1.694
Number of Target Sequences with motif90.0
Percentage of Target Sequences with motif5.78%
Number of Background Sequences with motif13.9
Percentage of Background Sequences with motif0.91%
Average Position of motif in Targets38.1 +/- 17.7bp
Average Position of motif in Background38.3 +/- 15.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

vnd/dmmpmm(Noyes_hd)/fly

Match Rank:1
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:RTTGCTTGAA-
-NCACTTGAAA

vnd/MA0253.1/Jaspar

Match Rank:2
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:RTTGCTTGAA-
--CACTTGAAA

Bcl6/MA0463.1/Jaspar

Match Rank:3
Score:0.71
Offset:0
Orientation:forward strand
Alignment:RTTGCTTGAA----
TTTCCTAGAAAGCA

PB0006.1_Bcl6b_1/Jaspar

Match Rank:4
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---RTTGCTTGAA---
NNNATTCCTCGAAAGN

STAT1/MA0137.3/Jaspar

Match Rank:5
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:RTTGCTTGAA-
TTTCCTGGAAA

NTL9/MA1046.1/Jaspar

Match Rank:6
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:RTTGCTTGAA
ATTACTTAA-

Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer

Match Rank:7
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:RTTGCTTGAA-----
TTTCCTGGAAAGNNN

Stat4/MA0518.1/Jaspar

Match Rank:8
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---RTTGCTTGAA-
NNNTTTCCTGGAAA

STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer

Match Rank:9
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--RTTGCTTGAA--
NATTTCCNGGAAAT

Ct/dmmpmm(Noyes_hd)/fly

Match Rank:10
Score:0.64
Offset:3
Orientation:forward strand
Alignment:RTTGCTTGAA---
---GCTTGAACAA