Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 1559)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 1524)	% of Background Sequences with Motif
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-8	-1.881e+01	0.0000	89.0	5.71%	28.8	1.89%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e-7	-1.764e+01	0.0000	285.0	18.29%	172.2	11.26%
SeqBias: TA-repeat	TATATATATA	1e-7	-1.668e+01	0.0000	508.0	32.61%	366.5	23.97%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-4	-1.089e+01	0.0018	74.0	4.75%	31.2	2.04%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-4	-1.040e+01	0.0024	127.0	8.15%	70.2	4.59%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-4	-1.018e+01	0.0024	88.0	5.65%	42.8	2.80%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-4	-9.402e+00	0.0046	149.0	9.56%	90.5	5.92%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-4	-9.393e+00	0.0046	102.0	6.55%	54.7	3.58%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e-3	-8.910e+00	0.0058	13.0	0.83%	0.7	0.05%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e-3	-8.567e+00	0.0074	80.0	5.13%	40.4	2.65%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-3	-8.449e+00	0.0075	126.0	8.09%	75.9	4.96%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-3	-8.399e+00	0.0075	34.0	2.18%	10.9	0.71%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-3	-7.911e+00	0.0109	90.0	5.78%	49.9	3.26%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e-3	-7.741e+00	0.0120	296.0	19.00%	221.2	14.47%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-3	-7.273e+00	0.0179	66.0	4.24%	33.4	2.18%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-3	-7.210e+00	0.0179	53.0	3.40%	24.1	1.58%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-3	-7.146e+00	0.0179	173.0	11.10%	118.5	7.75%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-3	-7.098e+00	0.0179	114.0	7.32%	70.9	4.63%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-2	-6.471e+00	0.0315	55.0	3.53%	27.5	1.80%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-2	-6.384e+00	0.0327	63.0	4.04%	33.7	2.20%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e-2	-6.360e+00	0.0327	112.0	7.19%	71.8	4.70%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-2	-6.273e+00	0.0332	24.0	1.54%	7.6	0.50%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e-2	-6.170e+00	0.0352	138.0	8.86%	93.9	6.14%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-2	-6.163e+00	0.0352	54.0	3.47%	27.3	1.79%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e-2	-6.163e+00	0.0352	9.0	0.58%	0.0	0.00%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-2	-5.826e+00	0.0439	23.0	1.48%	7.8	0.51%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-2	-5.708e+00	0.0476	185.0	11.87%	135.6	8.87%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-2	-5.675e+00	0.0476	51.0	3.27%	26.1	1.71%
SeqBias: CG bias	SSSSSSSSSS	1e-2	-5.424e+00	0.0589	628.0	40.31%	545.7	35.70%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-2	-5.388e+00	0.0589	22.0	1.41%	7.9	0.52%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-2	-5.089e+00	0.0769	49.0	3.15%	26.2	1.72%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-2	-4.965e+00	0.0844	14.0	0.90%	3.9	0.25%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-2	-4.956e+00	0.0844	12.0	0.77%	2.3	0.15%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-2	-4.928e+00	0.0844	43.0	2.76%	22.8	1.49%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-2	-4.924e+00	0.0844	36.0	2.31%	17.3	1.13%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e-2	-4.903e+00	0.0844	73.0	4.69%	45.9	3.00%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-2	-4.637e+00	0.1013	63.0	4.04%	38.4	2.51%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-1	-4.596e+00	0.1027	95.0	6.10%	64.5	4.22%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-1	-4.478e+00	0.1127	36.0	2.31%	18.2	1.19%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-1	-4.380e+00	0.1212	18.0	1.16%	6.0	0.39%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-1	-4.335e+00	0.1237	68.0	4.36%	43.4	2.84%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-1	-4.084e+00	0.1552	14.0	0.90%	4.4	0.29%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-1	-3.934e+00	0.1761	23.0	1.48%	10.3	0.67%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-1	-3.891e+00	0.1797	51.0	3.27%	31.1	2.03%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-1	-3.789e+00	0.1945	74.0	4.75%	50.6	3.31%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e-1	-3.729e+00	0.2021	147.0	9.44%	113.7	7.43%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-1	-3.575e+00	0.2308	204.0	13.09%	165.1	10.80%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-1	-3.421e+00	0.2636	5.0	0.32%	0.0	0.00%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-1	-3.376e+00	0.2701	40.0	2.57%	24.9	1.63%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-1	-3.367e+00	0.2701	14.0	0.90%	5.4	0.35%
SeqBias: C/A-bias	MMMMMMMMMM	1e-1	-3.311e+00	0.2769	1508.0	96.79%	1459.3	95.45%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-1	-2.983e+00	0.3770	16.0	1.03%	7.2	0.47%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-2.959e+00	0.3770	13.0	0.83%	6.0	0.39%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-1	-2.959e+00	0.3770	13.0	0.83%	5.8	0.38%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-2.906e+00	0.3850	24.0	1.54%	13.9	0.91%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-1	-2.849e+00	0.4001	8.0	0.51%	2.4	0.16%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-1	-2.836e+00	0.4001	17.0	1.09%	8.4	0.55%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-1	-2.836e+00	0.4001	17.0	1.09%	8.8	0.57%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-1	-2.772e+00	0.4102	35.0	2.25%	22.4	1.47%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-1	-2.759e+00	0.4102	11.0	0.71%	4.8	0.32%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-1	-2.758e+00	0.4102	404.0	25.93%	359.0	23.48%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-1	-2.736e+00	0.4102	4.0	0.26%	0.0	0.00%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-1	-2.736e+00	0.4102	4.0	0.26%	0.0	0.00%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-1	-2.736e+00	0.4102	4.0	0.26%	0.7	0.05%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-1	-2.725e+00	0.4102	6.0	0.39%	1.3	0.09%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-1	-2.578e+00	0.4453	368.0	23.62%	327.4	21.41%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e-1	-2.505e+00	0.4720	20.0	1.28%	11.1	0.72%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-2.404e+00	0.5140	43.0	2.76%	30.7	2.01%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-1	-2.393e+00	0.5140	17.0	1.09%	9.3	0.61%
SeqBias: G/A bias	RRRRRRRRRR	1e-1	-2.373e+00	0.5154	1523.0	97.75%	1481.1	96.88%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-1	-2.360e+00	0.5154	7.0	0.45%	2.5	0.16%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-1	-2.332e+00	0.5220	52.0	3.34%	38.6	2.52%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-2.287e+00	0.5387	14.0	0.90%	8.0	0.52%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-2.272e+00	0.5391	34.0	2.18%	23.8	1.55%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-2.213e+00	0.5646	24.0	1.54%	15.9	1.04%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-2.191e+00	0.5646	11.0	0.71%	5.1	0.33%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-2.191e+00	0.5646	11.0	0.71%	5.0	0.33%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-2.174e+00	0.5646	5.0	0.32%	1.6	0.10%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	-2.168e+00	0.5646	1239.0	79.53%	1187.6	77.68%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-2.083e+00	0.6028	91.0	5.84%	74.8	4.89%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-2.059e+00	0.6097	115.0	7.38%	96.9	6.34%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-2.051e+00	0.6097	3.0	0.19%	0.5	0.03%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-2.051e+00	0.6097	3.0	0.19%	0.7	0.04%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-2.013e+00	0.6152	17.0	1.09%	10.2	0.67%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.979e+00	0.6295	111.0	7.12%	93.5	6.12%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.970e+00	0.6295	23.0	1.48%	15.5	1.02%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.970e+00	0.6295	23.0	1.48%	15.1	0.99%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.963e+00	0.6295	13.0	0.83%	7.2	0.47%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.963e+00	0.6295	13.0	0.83%	7.5	0.49%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.961e+00	0.6295	9.0	0.58%	4.7	0.31%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.961e+00	0.6295	9.0	0.58%	4.6	0.30%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-1.900e+00	0.6295	301.0	19.32%	272.4	17.82%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.876e+00	0.6373	47.0	3.02%	36.6	2.39%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.801e+00	0.6801	27.0	1.73%	19.4	1.27%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.783e+00	0.6846	21.0	1.35%	14.2	0.93%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.739e+00	0.7086	11.0	0.71%	6.1	0.40%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.715e+00	0.7180	66.0	4.24%	54.9	3.59%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.688e+00	0.7302	17.0	1.09%	12.0	0.78%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.659e+00	0.7366	12.0	0.77%	7.4	0.48%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.659e+00	0.7366	12.0	0.77%	7.2	0.47%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.643e+00	0.7412	4.0	0.26%	1.4	0.09%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.617e+00	0.7534	52.0	3.34%	42.5	2.78%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.602e+00	0.7573	34.0	2.18%	26.9	1.76%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.596e+00	0.7573	19.0	1.22%	13.8	0.90%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.596e+00	0.7573	19.0	1.22%	14.0	0.91%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.595e+00	0.7573	8.0	0.51%	4.7	0.31%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.593e+00	0.7573	13.0	0.83%	8.6	0.56%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.571e+00	0.7573	27.0	1.73%	20.2	1.32%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.537e+00	0.7636	14.0	0.90%	9.3	0.61%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.522e+00	0.7683	48.0	3.08%	39.8	2.60%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.504e+00	0.7683	9.0	0.58%	5.4	0.36%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.504e+00	0.7683	9.0	0.58%	5.3	0.34%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.497e+00	0.7683	30.0	1.93%	24.0	1.57%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-1.497e+00	0.7683	30.0	1.93%	23.8	1.55%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.491e+00	0.7683	118.0	7.57%	104.3	6.82%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.462e+00	0.7683	23.0	1.48%	17.8	1.17%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-1.462e+00	0.7683	23.0	1.48%	17.3	1.13%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.451e+00	0.7683	5.0	0.32%	2.3	0.15%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.451e+00	0.7683	5.0	0.32%	2.4	0.16%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.451e+00	0.7683	5.0	0.32%	2.2	0.14%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.451e+00	0.7683	5.0	0.32%	2.3	0.15%
SeqBias: CA-repeat	CACACACACA	1e0	-1.445e+00	0.7683	375.0	24.07%	350.1	22.90%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.429e+00	0.7683	229.0	14.70%	210.3	13.75%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.398e+00	0.7713	46.0	2.95%	38.6	2.52%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-1.353e+00	0.8001	38.0	2.44%	31.9	2.09%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.346e+00	0.8001	28.0	1.80%	23.0	1.50%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.324e+00	0.8107	153.0	9.82%	139.5	9.13%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-1.299e+00	0.8250	85.0	5.46%	76.0	4.97%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.290e+00	0.8258	56.0	3.59%	48.2	3.15%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-1.266e+00	0.8391	45.0	2.89%	38.6	2.52%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-1.194e+00	0.8949	86.0	5.52%	77.6	5.08%
SeqBias: GA-repeat	GAGAGAGAGA	1e0	-1.178e+00	0.9031	483.0	31.00%	460.7	30.13%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.155e+00	0.9164	29.0	1.86%	24.5	1.60%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.140e+00	0.9165	3.0	0.19%	1.0	0.07%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.140e+00	0.9165	3.0	0.19%	1.3	0.09%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.098e+00	0.9488	34.0	2.18%	29.9	1.96%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-1.095e+00	0.9488	50.0	3.21%	44.5	2.91%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.089e+00	0.9488	69.0	4.43%	62.7	4.10%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.082e+00	0.9488	11.0	0.71%	8.1	0.53%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.081e+00	0.9488	22.0	1.41%	18.6	1.22%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.056e+00	0.9546	12.0	0.77%	9.6	0.63%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.054e+00	0.9546	24.0	1.54%	20.9	1.37%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-1.045e+00	0.9546	58.0	3.72%	52.8	3.45%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.042e+00	0.9546	4.0	0.26%	2.7	0.18%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.031e+00	0.9546	26.0	1.67%	22.3	1.46%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-1.030e+00	0.9546	61.0	3.92%	55.6	3.64%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.002e+00	0.9670	29.0	1.86%	25.2	1.65%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-9.968e-01	0.9670	15.0	0.96%	12.4	0.81%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-9.618e-01	0.9927	34.0	2.18%	30.3	1.98%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-9.514e-01	0.9964	80.0	5.13%	74.5	4.87%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-9.447e-01	0.9964	6.0	0.39%	4.7	0.31%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-9.433e-01	0.9964	19.0	1.22%	16.3	1.07%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-9.157e-01	1.0000	7.0	0.45%	6.0	0.39%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-9.142e-01	1.0000	42.0	2.70%	38.7	2.53%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-8.931e-01	1.0000	8.0	0.51%	6.6	0.43%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-8.909e-01	1.0000	47.0	3.02%	43.8	2.86%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-8.832e-01	1.0000	26.0	1.67%	23.9	1.56%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-8.748e-01	1.0000	9.0	0.58%	8.0	0.52%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-8.596e-01	1.0000	10.0	0.64%	8.2	0.54%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-8.596e-01	1.0000	10.0	0.64%	8.9	0.58%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-8.485e-01	1.0000	32.0	2.05%	29.9	1.96%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-7.780e-01	1.0000	20.0	1.28%	18.5	1.21%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-7.644e-01	1.0000	23.0	1.48%	21.1	1.38%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-7.529e-01	1.0000	26.0	1.67%	24.4	1.59%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-7.395e-01	1.0000	114.0	7.32%	110.4	7.22%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-7.331e-01	1.0000	119.0	7.64%	115.9	7.58%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-6.835e-01	1.0000	1.0	0.06%	0.0	0.00%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-6.835e-01	1.0000	1.0	0.06%	0.8	0.05%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-6.835e-01	1.0000	1.0	0.06%	0.0	0.00%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-6.835e-01	1.0000	1.0	0.06%	0.0	0.00%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-6.835e-01	1.0000	1.0	0.06%	0.8	0.05%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-6.787e-01	1.0000	2.0	0.13%	1.8	0.12%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-6.787e-01	1.0000	2.0	0.13%	1.7	0.11%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-6.755e-01	1.0000	65.0	4.17%	63.3	4.14%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-6.751e-01	1.0000	3.0	0.19%	2.3	0.15%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-6.751e-01	1.0000	3.0	0.19%	2.4	0.15%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-6.721e-01	1.0000	4.0	0.26%	3.3	0.21%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-6.721e-01	1.0000	4.0	0.26%	3.0	0.20%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-6.721e-01	1.0000	4.0	0.26%	3.0	0.20%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-6.695e-01	1.0000	5.0	0.32%	4.6	0.30%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-6.695e-01	1.0000	5.0	0.32%	4.3	0.28%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-6.695e-01	1.0000	5.0	0.32%	4.2	0.27%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-6.650e-01	1.0000	7.0	0.45%	6.5	0.42%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-6.639e-01	1.0000	75.0	4.81%	73.9	4.83%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-6.611e-01	1.0000	9.0	0.58%	8.6	0.56%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-6.577e-01	1.0000	11.0	0.71%	10.6	0.69%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-6.577e-01	1.0000	11.0	0.71%	10.3	0.67%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-6.561e-01	1.0000	12.0	0.77%	11.9	0.78%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-6.561e-01	1.0000	12.0	0.77%	11.1	0.73%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-6.490e-01	1.0000	17.0	1.09%	16.6	1.09%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-6.477e-01	1.0000	18.0	1.16%	17.0	1.11%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-6.453e-01	1.0000	20.0	1.28%	19.5	1.28%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-6.407e-01	1.0000	24.0	1.54%	23.3	1.52%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-6.386e-01	1.0000	26.0	1.67%	26.0	1.70%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-6.290e-01	1.0000	36.0	2.31%	35.3	2.31%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-6.132e-01	1.0000	56.0	3.59%	55.7	3.64%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-5.809e-01	1.0000	110.0	7.06%	109.2	7.14%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-5.438e-01	1.0000	66.0	4.24%	66.2	4.33%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-5.404e-01	1.0000	82.0	5.26%	82.5	5.40%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-5.380e-01	1.0000	25.0	1.60%	26.0	1.70%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-5.303e-01	1.0000	19.0	1.22%	20.0	1.31%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-5.303e-01	1.0000	19.0	1.22%	19.8	1.29%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-5.186e-01	1.0000	14.0	0.90%	14.3	0.94%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-4.883e-01	1.0000	8.0	0.51%	8.1	0.53%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-4.824e-01	1.0000	54.0	3.47%	55.7	3.65%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-4.794e-01	1.0000	7.0	0.45%	7.1	0.46%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-4.778e-01	1.0000	46.0	2.95%	47.1	3.08%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-4.682e-01	1.0000	6.0	0.39%	7.0	0.46%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.539e-01	1.0000	5.0	0.32%	5.2	0.34%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.539e-01	1.0000	5.0	0.32%	5.2	0.34%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-4.347e-01	1.0000	4.0	0.26%	4.8	0.32%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-4.347e-01	1.0000	4.0	0.26%	4.1	0.27%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-4.141e-01	1.0000	15.0	0.96%	16.1	1.05%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-4.085e-01	1.0000	14.0	0.90%	15.3	1.00%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-4.073e-01	1.0000	3.0	0.19%	3.6	0.23%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-4.022e-01	1.0000	13.0	0.83%	14.7	0.96%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-3.886e-01	1.0000	30.0	1.93%	32.4	2.12%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-3.873e-01	1.0000	11.0	0.71%	12.9	0.85%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-3.811e-01	1.0000	187.0	12.00%	191.2	12.51%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-3.784e-01	1.0000	10.0	0.64%	11.1	0.72%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-3.669e-01	1.0000	23.0	1.48%	25.9	1.69%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-3.664e-01	1.0000	101.0	6.48%	105.3	6.89%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-3.640e-01	1.0000	2.0	0.13%	2.5	0.16%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-3.640e-01	1.0000	2.0	0.13%	3.0	0.19%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-3.640e-01	1.0000	2.0	0.13%	2.3	0.15%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-3.640e-01	1.0000	2.0	0.13%	3.0	0.19%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-3.588e-01	1.0000	21.0	1.35%	23.9	1.56%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-3.563e-01	1.0000	8.0	0.51%	9.5	0.62%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-3.424e-01	1.0000	7.0	0.45%	8.0	0.53%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-3.404e-01	1.0000	35.0	2.25%	38.8	2.54%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-3.291e-01	1.0000	97.0	6.23%	102.8	6.72%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-3.257e-01	1.0000	6.0	0.39%	7.1	0.47%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-3.257e-01	1.0000	6.0	0.39%	7.6	0.50%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-3.252e-01	1.0000	91.0	5.84%	96.3	6.30%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-3.191e-01	1.0000	14.0	0.90%	16.9	1.10%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-3.054e-01	1.0000	5.0	0.32%	6.6	0.43%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-2.911e-01	1.0000	36.0	2.31%	41.0	2.68%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-2.826e-01	1.0000	10.0	0.64%	12.8	0.84%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-2.811e-01	1.0000	1.0	0.06%	1.8	0.12%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-2.811e-01	1.0000	1.0	0.06%	2.0	0.13%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-2.811e-01	1.0000	1.0	0.06%	1.2	0.08%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-2.799e-01	1.0000	4.0	0.26%	5.5	0.36%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-2.799e-01	1.0000	4.0	0.26%	6.0	0.39%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-2.799e-01	1.0000	4.0	0.26%	5.4	0.35%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-2.725e-01	1.0000	47.0	3.02%	52.3	3.42%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-2.607e-01	1.0000	62.0	3.98%	68.4	4.47%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-2.464e-01	1.0000	3.0	0.19%	4.8	0.31%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-2.431e-01	1.0000	35.0	2.25%	40.1	2.62%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-2.420e-01	1.0000	7.0	0.45%	9.8	0.64%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-2.420e-01	1.0000	7.0	0.45%	9.3	0.61%
Tal1	CATCTG	1e0	-2.418e-01	1.0000	72.0	4.62%	79.3	5.19%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-2.321e-01	1.0000	46.0	2.95%	52.2	3.42%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-2.268e-01	1.0000	30.0	1.93%	35.8	2.34%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-2.253e-01	1.0000	43.0	2.76%	49.9	3.26%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-2.194e-01	1.0000	28.0	1.80%	33.7	2.20%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-2.100e-01	1.0000	93.0	5.97%	102.5	6.70%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-2.054e-01	1.0000	1131.0	72.59%	1130.5	73.94%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-2.035e-01	1.0000	5.0	0.32%	7.3	0.48%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-2.000e-01	1.0000	2.0	0.13%	3.9	0.25%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-2.000e-01	1.0000	2.0	0.13%	3.1	0.20%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-1.831e-01	1.0000	53.0	3.40%	61.1	3.99%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.786e-01	1.0000	38.0	2.44%	45.7	2.99%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.758e-01	1.0000	37.0	2.37%	44.7	2.92%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-1.691e-01	1.0000	7.0	0.45%	10.6	0.69%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.630e-01	1.0000	11.0	0.71%	15.2	0.99%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-1.630e-01	1.0000	11.0	0.71%	15.2	1.00%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.619e-01	1.0000	43.0	2.76%	51.0	3.34%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.546e-01	1.0000	40.0	2.57%	48.4	3.17%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.528e-01	1.0000	10.0	0.64%	14.5	0.95%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-1.522e-01	1.0000	80.0	5.13%	91.8	6.01%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-1.492e-01	1.0000	21.0	1.35%	27.8	1.82%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.304e-01	1.0000	51.0	3.27%	61.5	4.02%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.275e-01	1.0000	17.0	1.09%	23.5	1.54%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.214e-01	1.0000	16.0	1.03%	22.1	1.44%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.207e-01	1.0000	57.0	3.66%	68.0	4.45%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-1.191e-01	1.0000	99.0	6.35%	113.3	7.41%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-1.106e-01	1.0000	2.0	0.13%	4.4	0.29%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.105e-01	1.0000	10.0	0.64%	15.7	1.03%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-1.027e-01	1.0000	38.0	2.44%	48.8	3.19%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.008e-01	1.0000	9.0	0.58%	14.7	0.96%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-9.871e-02	1.0000	29.0	1.86%	38.8	2.54%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-9.707e-02	1.0000	64.0	4.11%	77.7	5.08%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-9.612e-02	1.0000	22.0	1.41%	30.2	1.97%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-9.311e-02	1.0000	42.0	2.70%	53.9	3.53%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-9.311e-02	1.0000	42.0	2.70%	53.2	3.48%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-8.865e-02	1.0000	3.0	0.19%	6.5	0.42%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-8.563e-02	1.0000	25.0	1.60%	34.7	2.27%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-8.288e-02	1.0000	54.0	3.47%	67.2	4.39%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-8.264e-02	1.0000	45.0	2.89%	57.1	3.73%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-8.090e-02	1.0000	14.0	0.90%	22.0	1.44%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-7.046e-02	1.0000	4.0	0.26%	8.8	0.58%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-6.376e-02	1.0000	19.0	1.22%	28.9	1.89%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-6.186e-02	1.0000	1.0	0.06%	3.6	0.23%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-6.186e-02	1.0000	1.0	0.06%	3.6	0.23%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-6.186e-02	1.0000	1.0	0.06%	3.5	0.23%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-6.099e-02	1.0000	2.0	0.13%	5.9	0.39%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-5.877e-02	1.0000	33.0	2.12%	45.3	2.97%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-5.592e-02	1.0000	10.0	0.64%	17.2	1.13%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-5.535e-02	1.0000	69.0	4.43%	86.8	5.68%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-5.491e-02	1.0000	21.0	1.35%	31.1	2.03%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-5.365e-02	1.0000	7.0	0.45%	13.3	0.87%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-5.243e-02	1.0000	3.0	0.19%	7.9	0.52%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-5.187e-02	1.0000	16.0	1.03%	25.6	1.67%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-5.148e-02	1.0000	65.0	4.17%	82.1	5.37%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-4.466e-02	1.0000	22.0	1.41%	33.3	2.18%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-4.251e-02	1.0000	8.0	0.51%	15.3	1.00%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-4.229e-02	1.0000	36.0	2.31%	50.4	3.29%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-3.531e-02	1.0000	112.0	7.19%	136.9	8.96%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-3.385e-02	1.0000	9.0	0.58%	17.1	1.12%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-3.067e-02	1.0000	3.0	0.19%	8.7	0.57%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-3.011e-02	1.0000	1.0	0.06%	4.8	0.31%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-2.950e-02	1.0000	89.0	5.71%	112.6	7.37%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-2.753e-02	1.0000	222.0	14.25%	255.3	16.70%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-2.647e-02	1.0000	4.0	0.26%	10.1	0.66%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-2.647e-02	1.0000	4.0	0.26%	10.5	0.69%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-2.562e-02	1.0000	35.0	2.25%	51.7	3.38%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-2.439e-02	1.0000	71.0	4.56%	93.1	6.09%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-2.437e-02	1.0000	39.0	2.50%	56.8	3.72%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-2.433e-02	1.0000	117.0	7.51%	144.8	9.47%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-2.300e-02	1.0000	9.0	0.58%	18.8	1.23%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-2.170e-02	1.0000	11.0	0.71%	21.8	1.42%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-2.109e-02	1.0000	27.0	1.73%	42.1	2.76%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-2.043e-02	1.0000	126.0	8.09%	155.2	10.15%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.747e-02	1.0000	115.0	7.38%	144.7	9.46%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.436e-02	1.0000	72.0	4.62%	97.7	6.39%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-1.372e-02	1.0000	101.0	6.48%	130.9	8.56%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.285e-02	1.0000	82.0	5.26%	109.5	7.16%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.128e-02	1.0000	26.0	1.67%	43.8	2.87%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-1.082e-02	1.0000	33.0	2.12%	52.2	3.41%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-1.073e-02	1.0000	19.0	1.22%	34.1	2.23%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-1.054e-02	1.0000	1451.0	93.13%	1452.3	94.99%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.028e-02	1.0000	9.0	0.58%	20.8	1.36%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-9.597e-03	1.0000	85.0	5.46%	114.5	7.49%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-9.503e-03	1.0000	24.0	1.54%	42.0	2.75%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-9.429e-03	1.0000	59.0	3.79%	84.6	5.53%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-7.899e-03	1.0000	78.0	5.01%	107.4	7.03%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-7.839e-03	1.0000	1421.0	91.21%	1428.5	93.44%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-6.281e-03	1.0000	20.0	1.28%	37.6	2.46%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-5.976e-03	1.0000	36.0	2.31%	58.5	3.83%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-5.306e-03	1.0000	2.0	0.13%	9.1	0.60%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-4.389e-03	1.0000	52.0	3.34%	79.9	5.23%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-3.268e-03	1.0000	4.0	0.26%	14.8	0.96%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-2.968e-03	1.0000	135.0	8.66%	177.4	11.61%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-2.848e-03	1.0000	9.0	0.58%	23.2	1.52%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-2.835e-03	1.0000	2.0	0.13%	10.1	0.66%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-2.127e-03	1.0000	8.0	0.51%	22.9	1.50%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.900e-03	1.0000	90.0	5.78%	128.6	8.41%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.689e-03	1.0000	6.0	0.39%	19.2	1.25%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.491e-03	1.0000	30.0	1.93%	55.8	3.65%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.429e-03	1.0000	50.0	3.21%	81.3	5.32%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.333e-03	1.0000	204.0	13.09%	258.8	16.93%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-6.290e-04	1.0000	154.0	9.88%	207.4	13.57%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-4.300e-04	1.0000	91.0	5.84%	136.0	8.90%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-2.420e-04	1.0000	140.0	8.99%	196.9	12.88%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.950e-04	1.0000	99.0	6.35%	149.2	9.76%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.050e-04	1.0000	1.0	0.06%	12.4	0.81%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-8.400e-05	1.0000	253.0	16.24%	328.9	21.52%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-6.700e-05	1.0000	13.0	0.83%	38.9	2.54%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-5.400e-05	1.0000	102.0	6.55%	158.9	10.39%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-5.200e-05	1.0000	1.0	0.06%	13.9	0.91%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-4.000e-05	1.0000	38.0	2.44%	77.8	5.09%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.200e-05	1.0000	52.0	3.34%	100.3	6.56%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-2.000e-06	1.0000	15.0	0.96%	50.0	3.27%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-2.000e-06	1.0000	4.0	0.26%	27.0	1.77%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-0.000e+00	1.0000	33.0	2.12%	99.3	6.50%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-0.000e+00	1.0000	0.0	0.00%	2.0	0.13%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-0.000e+00	1.0000	0.0	0.00%	2.4	0.16%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-0.000e+00	1.0000	0.0	0.00%	1.9	0.12%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-0.000e+00	1.0000	0.0	0.00%	1.6	0.11%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-0.000e+00	1.0000	0.0	0.00%	1.3	0.09%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-0.000e+00	1.0000	0.0	0.00%	3.5	0.23%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	0.000e+00	1.0000	0.0	0.00%	0.8	0.05%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	1558.0	100.00%	1528.8	100.00%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	0.000e+00	1.0000	0.0	0.00%	4.4	0.29%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	0.000e+00	1.0000	0.0	0.00%	4.0	0.26%