Information for 11-GAGGAAGGCA (Motif 12)


Reverse Opposite:

p-value:1e-13
log p-value:-3.062e+01
Information Content per bp:1.736
Number of Target Sequences with motif63.0
Percentage of Target Sequences with motif2.62%
Number of Background Sequences with motif6.2
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets39.3 +/- 21.7bp
Average Position of motif in Background52.2 +/- 2.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

GCR1/Literature(Harbison)/Yeast

Match Rank:1
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:GAGGAAGGCA
GAGGAAGCC-

GCR2/MA0305.1/Jaspar

Match Rank:2
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:GAGGAAGGCA
-NGGAAGC--

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GAGGAAGGCA-----
AGGGAAGTCATTTCT

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GAGGAAGGCA
AGAGGAAGTG-

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GAGGAAGGCA-
TGGGGAAGGGCM

GCR1(MacIsaac)/Yeast

Match Rank:6
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:GAGGAAGGCA
-TGGAAGCCC

GCR2(MacIsaac)/Yeast

Match Rank:7
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:GAGGAAGGCA
-NGGAAGC--

ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer

Match Rank:8
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--GAGGAAGGCA
ACVAGGAAGT--

PB0058.1_Sfpi1_1/Jaspar

Match Rank:9
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----GAGGAAGGCA
TTAAGAGGAAGTTA

EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer

Match Rank:10
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GAGGAAGGCA
AVCAGGAAGT--