Information for 12-TATGTTGCCCAG (Motif 17)


Reverse Opposite:

p-value:1e-10
log p-value:-2.481e+01
Information Content per bp:1.869
Number of Target Sequences with motif61.0
Percentage of Target Sequences with motif2.54%
Number of Background Sequences with motif9.7
Percentage of Background Sequences with motif0.39%
Average Position of motif in Targets38.9 +/- 19.4bp
Average Position of motif in Background36.7 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.77
Offset:5
Orientation:reverse strand
Alignment:TATGTTGCCCAG---
-----TGCCCAGNHW

RAV1(1)(AP2/EREBP)/Arabidopsis thaliana/AthaMap

Match Rank:2
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--TATGTTGCCCAG
NTTCTGTTGCNN--

RAV1/MA0582.1/Jaspar

Match Rank:3
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--TATGTTGCCCAG
NTTCTGTTGCNN--

WRKY62/MA1091.1/Jaspar

Match Rank:4
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:TATGTTGCCCAG
---GTTGACCA-

RIM101/Literature(Harbison)/Yeast

Match Rank:5
Score:0.65
Offset:5
Orientation:forward strand
Alignment:TATGTTGCCCAG
-----TGCCAAG

RIM101(MacIsaac)/Yeast

Match Rank:6
Score:0.65
Offset:5
Orientation:forward strand
Alignment:TATGTTGCCCAG
-----TGCCAAG

mab-3/MA0262.1/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TATGTTGCCCAG-
AATGTTGCGAATT

MA0262.1_mab-3/Jaspar

Match Rank:8
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TATGTTGCCCAG-
AATGTTGCGAATT

HIC2/MA0738.1/Jaspar

Match Rank:9
Score:0.64
Offset:4
Orientation:forward strand
Alignment:TATGTTGCCCAG-
----ATGCCCACC

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TATGTTGCCCAG-
-CTGTTGCTAGGS