Information for 20-CATGYTACTT (Motif 20)


Reverse Opposite:

p-value:1e-9
log p-value:-2.261e+01
Information Content per bp:1.816
Number of Target Sequences with motif45.0
Percentage of Target Sequences with motif1.87%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets37.2 +/- 19.5bp
Average Position of motif in Background46.9 +/- 8.0bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0154.1_Osr1_2/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CATGYTACTT-----
ACATGCTACCTAATAC

PB0155.1_Osr2_2/Jaspar

Match Rank:2
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CATGYTACTT-----
ACTTGCTACCTACACC

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:3
Score:0.69
Offset:-9
Orientation:forward strand
Alignment:---------CATGYTACTT-
ACTYKNATTCGTGNTACTTC

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:4
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CATGYTACTT----
AGATGCTRCTRCCHT

odd/dmmpmm(Noyes)/fly

Match Rank:5
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CATGYTACTT--
--TGCTACTGTT

DMRT3/MA0610.1/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CATGYTACTT-
NTTGATACATT

GAT3(MacIsaac)/Yeast

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CATGYTACTT
CATGTTAT--

ovo/dmmpmm(Down)/fly

Match Rank:8
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CATGYTACTT--
-CCGTTACTTTT

LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer

Match Rank:9
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CATGYTACTT--
--AGATATTTHT

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CATGYTACTT--
TATGCWAATBAV