Information for 4-CTCWGTCTCCCA (Motif 4)


Reverse Opposite:

p-value:1e-20
log p-value:-4.791e+01
Information Content per bp:1.723
Number of Target Sequences with motif173.0
Percentage of Target Sequences with motif7.20%
Number of Background Sequences with motif44.8
Percentage of Background Sequences with motif1.79%
Average Position of motif in Targets41.4 +/- 19.8bp
Average Position of motif in Background31.6 +/- 21.2bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CTCWGTCTCCCA---
--CTGTCTGTCACCT

ARF1(ABI3/VP1)/Arabidopsis thaliana/AthaMap

Match Rank:2
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CTCWGTCTCCCA
-CTTGTCTCCCA

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CTCWGTCTCCCA---
---TGTCTGDCACCT

Su(H)/dmmpmm(Bergman)/fly

Match Rank:4
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:CTCWGTCTCCCA-
------CTCCCAC

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CTCWGTCTCCCA
GCTCGGSCTC---

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:6
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CTCWGTCTCCCA--
----HTTTCCCASG

eor-1/MA0543.1/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CTCWGTCTCCCA
TCTCTGCGTCTCTNN

GCR1/MA0304.1/Jaspar

Match Rank:8
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CTCWGTCTCCCA
----GGCTTCCA

SeqBias: GA-repeat

Match Rank:9
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CTCWGTCTCCCA
TCTCTCTCTC---

Su(H)/MA0085.1/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CTCWGTCTCCCA---
ATCTCGGTTCCCACAN