Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 2403)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 2499)	% of Background Sequences with Motif
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e-7	-1.748e+01	0.0000	416.0	17.31%	295.4	11.82%
SeqBias: TA-repeat	TATATATATA	1e-7	-1.711e+01	0.0000	761.0	31.67%	618.7	24.75%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-7	-1.691e+01	0.0000	173.0	7.20%	93.7	3.75%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-6	-1.456e+01	0.0000	119.0	4.95%	58.8	2.35%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-5	-1.268e+01	0.0002	193.0	8.03%	121.5	4.86%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e-5	-1.256e+01	0.0002	474.0	19.73%	371.9	14.87%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-4	-1.095e+01	0.0010	227.0	9.45%	156.7	6.27%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-4	-1.050e+01	0.0013	138.0	5.74%	83.7	3.35%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e-4	-1.046e+01	0.0013	212.0	8.82%	145.9	5.84%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-4	-1.027e+01	0.0013	99.0	4.12%	53.3	2.13%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e-4	-9.523e+00	0.0026	175.0	7.28%	117.5	4.70%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-3	-9.130e+00	0.0035	233.0	9.70%	169.1	6.76%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-3	-8.210e+00	0.0081	155.0	6.45%	105.5	4.22%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-3	-8.142e+00	0.0081	150.0	6.24%	101.5	4.06%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e-3	-8.098e+00	0.0081	23.0	0.96%	5.2	0.21%
SeqBias: CG bias	SSSSSSSSSS	1e-3	-7.925e+00	0.0087	890.0	37.04%	810.3	32.41%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-3	-7.835e+00	0.0090	83.0	3.45%	47.6	1.90%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-3	-7.558e+00	0.0112	175.0	7.28%	125.4	5.02%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-3	-7.345e+00	0.0132	144.0	5.99%	99.3	3.97%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-3	-6.962e+00	0.0183	17.0	0.71%	3.2	0.13%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-2	-6.772e+00	0.0211	32.0	1.33%	12.5	0.50%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-2	-6.529e+00	0.0257	82.0	3.41%	50.1	2.01%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-2	-6.419e+00	0.0274	128.0	5.33%	90.0	3.60%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-2	-6.188e+00	0.0331	35.0	1.46%	15.7	0.63%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-2	-5.977e+00	0.0393	33.0	1.37%	14.0	0.56%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-2	-5.844e+00	0.0431	15.0	0.62%	3.6	0.14%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-2	-5.667e+00	0.0496	177.0	7.37%	137.0	5.48%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e-2	-5.518e+00	0.0555	36.0	1.50%	17.1	0.68%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-2	-5.371e+00	0.0600	41.0	1.71%	21.1	0.84%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-2	-5.371e+00	0.0600	41.0	1.71%	21.8	0.87%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-2	-5.343e+00	0.0600	256.0	10.65%	211.4	8.45%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e-2	-4.950e+00	0.0857	33.0	1.37%	16.4	0.65%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-2	-4.945e+00	0.0857	85.0	3.54%	58.3	2.33%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-2	-4.831e+00	0.0908	38.0	1.58%	20.8	0.83%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-2	-4.708e+00	0.0998	92.0	3.83%	65.7	2.63%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-2	-4.705e+00	0.0998	536.0	22.31%	488.2	19.53%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-4.510e+00	0.1150	19.0	0.79%	7.8	0.31%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e-1	-4.390e+00	0.1263	123.0	5.12%	95.0	3.80%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-1	-4.278e+00	0.1376	83.0	3.45%	59.3	2.37%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-1	-4.135e+00	0.1549	80.0	3.33%	57.4	2.29%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-1	-3.991e+00	0.1745	77.0	3.20%	55.8	2.23%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-1	-3.927e+00	0.1816	97.0	4.04%	73.1	2.92%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-1	-3.742e+00	0.2133	20.0	0.83%	9.3	0.37%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-1	-3.730e+00	0.2133	97.0	4.04%	74.0	2.96%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e-1	-3.729e+00	0.2133	11.0	0.46%	3.3	0.13%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-1	-3.721e+00	0.2133	178.0	7.41%	149.8	5.99%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-3.700e+00	0.2133	38.0	1.58%	23.5	0.94%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-1	-3.473e+00	0.2501	113.0	4.70%	90.9	3.63%
SeqBias: C/A-bias	MMMMMMMMMM	1e-1	-3.457e+00	0.2501	2322.0	96.63%	2389.7	95.58%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-1	-3.407e+00	0.2566	32.0	1.33%	19.6	0.78%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-1	-3.359e+00	0.2638	67.0	2.79%	49.8	1.99%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-1	-3.337e+00	0.2646	45.0	1.87%	30.9	1.24%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e-1	-3.295e+00	0.2706	114.0	4.74%	92.1	3.69%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-1	-3.277e+00	0.2706	24.0	1.00%	13.2	0.53%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-1	-3.259e+00	0.2706	29.0	1.21%	17.9	0.72%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-1	-3.191e+00	0.2843	30.0	1.25%	18.2	0.73%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-1	-3.143e+00	0.2931	21.0	0.87%	11.6	0.47%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-1	-3.105e+00	0.2992	117.0	4.87%	96.8	3.87%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-2.975e+00	0.3350	28.0	1.17%	17.6	0.70%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-1	-2.973e+00	0.3350	56.0	2.33%	41.2	1.65%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-1	-2.896e+00	0.3505	15.0	0.62%	7.2	0.29%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-1	-2.856e+00	0.3589	173.0	7.20%	151.9	6.08%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-1	-2.715e+00	0.4065	111.0	4.62%	93.3	3.73%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-1	-2.678e+00	0.4156	71.0	2.95%	56.2	2.25%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-1	-2.651e+00	0.4204	13.0	0.54%	6.2	0.25%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-1	-2.582e+00	0.4436	18.0	0.75%	10.6	0.43%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e-1	-2.551e+00	0.4505	10.0	0.42%	4.7	0.19%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-1	-2.401e+00	0.5156	43.0	1.79%	32.5	1.30%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-2.300e+00	0.5542	5.0	0.21%	2.0	0.08%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-2.300e+00	0.5542	5.0	0.21%	1.6	0.07%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-2.271e+00	0.5625	23.0	0.96%	15.8	0.63%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-2.261e+00	0.5625	326.0	13.57%	308.3	12.33%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-2.207e+00	0.5835	42.0	1.75%	32.6	1.30%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-2.195e+00	0.5835	180.0	7.49%	164.5	6.58%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-2.158e+00	0.5961	92.0	3.83%	79.8	3.19%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.136e+00	0.5961	9.0	0.37%	4.8	0.19%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.136e+00	0.5961	9.0	0.37%	4.8	0.19%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-2.116e+00	0.5980	27.0	1.12%	19.2	0.77%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-2.089e+00	0.6063	105.0	4.37%	92.7	3.71%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-2.056e+00	0.6192	21.0	0.87%	14.1	0.56%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-2.036e+00	0.6238	53.0	2.21%	43.9	1.76%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-2.031e+00	0.6238	15.0	0.62%	9.7	0.39%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-2.017e+00	0.6238	10.0	0.42%	5.5	0.22%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-2.004e+00	0.6238	42.0	1.75%	33.5	1.34%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-2.003e+00	0.6238	463.0	19.27%	450.2	18.01%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.980e+00	0.6238	23.0	0.96%	16.2	0.65%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.932e+00	0.6442	168.0	6.99%	155.8	6.23%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.923e+00	0.6442	17.0	0.71%	11.7	0.47%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.890e+00	0.6567	26.0	1.08%	19.5	0.78%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.879e+00	0.6570	18.0	0.75%	12.4	0.49%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.878e+00	0.6570	52.0	2.16%	43.6	1.74%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-1.835e+00	0.6717	79.0	3.29%	69.3	2.77%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.805e+00	0.6844	20.0	0.83%	14.4	0.58%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.796e+00	0.6844	131.0	5.45%	120.5	4.82%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.789e+00	0.6844	13.0	0.54%	8.7	0.35%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.746e+00	0.7033	22.0	0.92%	16.7	0.67%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.743e+00	0.7033	8.0	0.33%	4.2	0.17%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.742e+00	0.7033	4.0	0.17%	2.0	0.08%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.742e+00	0.7033	4.0	0.17%	1.2	0.05%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.721e+00	0.7033	23.0	0.96%	17.0	0.68%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.721e+00	0.7033	23.0	0.96%	17.9	0.72%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-1.673e+00	0.7118	2341.0	97.42%	2425.0	96.99%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.671e+00	0.7118	39.0	1.62%	32.2	1.29%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-1.656e+00	0.7118	16.0	0.67%	11.9	0.48%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.656e+00	0.7118	16.0	0.67%	11.9	0.48%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.647e+00	0.7118	577.0	24.01%	573.0	22.92%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.608e+00	0.7245	29.0	1.21%	23.8	0.95%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.594e+00	0.7282	203.0	8.45%	194.1	7.76%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.576e+00	0.7345	84.0	3.50%	76.0	3.04%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.558e+00	0.7405	5.0	0.21%	2.2	0.09%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.509e+00	0.7706	38.0	1.58%	33.0	1.32%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.480e+00	0.7793	42.0	1.75%	36.7	1.47%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.480e+00	0.7793	42.0	1.75%	36.7	1.47%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.469e+00	0.7816	307.0	12.78%	301.5	12.06%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.463e+00	0.7816	13.0	0.54%	9.9	0.39%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-1.463e+00	0.7816	13.0	0.54%	9.2	0.37%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.452e+00	0.7816	95.0	3.95%	89.0	3.56%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.450e+00	0.7816	6.0	0.25%	4.0	0.16%
SeqBias: CA-repeat	CACACACACA	1e0	-1.433e+00	0.7816	587.0	24.43%	589.0	23.56%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.426e+00	0.7816	2.0	0.08%	0.5	0.02%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.426e+00	0.7816	28.0	1.17%	24.0	0.96%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.407e+00	0.7816	233.0	9.70%	227.1	9.08%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.397e+00	0.7816	31.0	1.29%	26.5	1.06%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-1.351e+00	0.8087	107.0	4.45%	101.1	4.04%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.269e+00	0.8706	25.0	1.04%	22.0	0.88%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.229e+00	0.8990	11.0	0.46%	8.2	0.33%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.227e+00	0.8990	32.0	1.33%	28.5	1.14%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.212e+00	0.9002	3.0	0.12%	1.9	0.08%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.208e+00	0.9002	12.0	0.50%	9.1	0.36%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.200e+00	0.9002	40.0	1.66%	36.5	1.46%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.189e+00	0.9002	45.0	1.87%	41.7	1.67%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.176e+00	0.9046	14.0	0.58%	11.9	0.48%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.170e+00	0.9046	75.0	3.12%	71.4	2.86%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.123e+00	0.9325	4.0	0.17%	2.9	0.12%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-1.123e+00	0.9325	4.0	0.17%	3.0	0.12%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.110e+00	0.9379	22.0	0.92%	19.6	0.79%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	-1.078e+00	0.9613	1866.0	77.65%	1929.0	77.15%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-1.078e+00	0.9613	75.0	3.12%	72.5	2.90%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.075e+00	0.9613	71.0	2.95%	69.0	2.76%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.074e+00	0.9613	5.0	0.21%	3.2	0.13%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.074e+00	0.9613	5.0	0.21%	3.1	0.12%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-1.069e+00	0.9613	56.0	2.33%	53.1	2.12%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.016e+00	0.9795	150.0	6.24%	149.1	5.96%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-9.836e-01	1.0000	69.0	2.87%	67.7	2.71%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-9.825e-01	1.0000	10.0	0.42%	8.9	0.36%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-9.614e-01	1.0000	49.0	2.04%	47.5	1.90%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-9.594e-01	1.0000	47.0	1.96%	45.4	1.81%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-9.570e-01	1.0000	15.0	0.62%	13.5	0.54%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-9.455e-01	1.0000	27.0	1.12%	25.1	1.00%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-8.745e-01	1.0000	55.0	2.29%	54.9	2.20%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-8.689e-01	1.0000	52.0	2.16%	51.9	2.07%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-8.368e-01	1.0000	36.0	1.50%	35.4	1.42%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-8.364e-01	1.0000	77.0	3.20%	77.3	3.09%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-8.344e-01	1.0000	76.0	3.16%	76.2	3.05%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-8.306e-01	1.0000	109.0	4.54%	110.1	4.40%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-8.194e-01	1.0000	103.0	4.29%	104.3	4.17%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-8.136e-01	1.0000	66.0	2.75%	66.1	2.64%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-8.047e-01	1.0000	62.0	2.58%	62.5	2.50%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-7.796e-01	1.0000	14.0	0.58%	13.2	0.53%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-7.763e-01	1.0000	13.0	0.54%	12.3	0.49%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-7.692e-01	1.0000	11.0	0.46%	10.6	0.43%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-7.574e-01	1.0000	8.0	0.33%	7.1	0.28%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-7.574e-01	1.0000	8.0	0.33%	8.0	0.32%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-7.482e-01	1.0000	6.0	0.25%	5.9	0.24%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-7.482e-01	1.0000	6.0	0.25%	5.8	0.23%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-7.482e-01	1.0000	6.0	0.25%	5.4	0.22%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-7.431e-01	1.0000	5.0	0.21%	4.6	0.19%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-7.431e-01	1.0000	5.0	0.21%	4.4	0.17%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-7.431e-01	1.0000	5.0	0.21%	4.3	0.17%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-7.374e-01	1.0000	4.0	0.17%	3.5	0.14%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-7.374e-01	1.0000	4.0	0.17%	3.9	0.15%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-7.310e-01	1.0000	3.0	0.12%	2.7	0.11%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-7.233e-01	1.0000	2.0	0.08%	2.0	0.08%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-7.233e-01	1.0000	2.0	0.08%	1.4	0.06%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-7.233e-01	1.0000	2.0	0.08%	1.5	0.06%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-7.174e-01	1.0000	58.0	2.41%	59.6	2.38%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-7.131e-01	1.0000	1.0	0.04%	0.0	0.00%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-7.116e-01	1.0000	82.0	3.41%	84.1	3.36%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-6.733e-01	1.0000	21.0	0.87%	21.3	0.85%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-6.663e-01	1.0000	42.0	1.75%	44.0	1.76%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-6.663e-01	1.0000	42.0	1.75%	43.2	1.73%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-6.502e-01	1.0000	17.0	0.71%	17.3	0.69%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-6.485e-01	1.0000	59.0	2.46%	61.7	2.47%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-6.436e-01	1.0000	16.0	0.67%	16.5	0.66%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-6.374e-01	1.0000	212.0	8.82%	221.7	8.87%
Tal1	CATCTG	1e0	-6.328e-01	1.0000	119.0	4.95%	124.9	5.00%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-6.210e-01	1.0000	13.0	0.54%	13.5	0.54%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-6.144e-01	1.0000	69.0	2.87%	72.9	2.92%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-6.114e-01	1.0000	68.0	2.83%	71.8	2.87%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-6.064e-01	1.0000	1822.0	75.82%	1898.3	75.93%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-6.028e-01	1.0000	11.0	0.46%	11.6	0.46%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-5.994e-01	1.0000	45.0	1.87%	47.7	1.91%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-5.945e-01	1.0000	26.0	1.08%	27.7	1.11%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-5.765e-01	1.0000	23.0	0.96%	25.0	1.00%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-5.765e-01	1.0000	23.0	0.96%	24.5	0.98%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-5.675e-01	1.0000	8.0	0.33%	8.3	0.33%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-5.675e-01	1.0000	8.0	0.33%	8.8	0.35%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-5.400e-01	1.0000	32.0	1.33%	34.3	1.37%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-5.346e-01	1.0000	6.0	0.25%	6.0	0.24%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-5.345e-01	1.0000	31.0	1.29%	33.1	1.32%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-5.226e-01	1.0000	129.0	5.37%	137.3	5.49%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-5.041e-01	1.0000	14.0	0.58%	15.6	0.62%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-5.041e-01	1.0000	14.0	0.58%	15.8	0.63%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-4.862e-01	1.0000	4.0	0.17%	4.8	0.19%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-4.857e-01	1.0000	130.0	5.41%	139.9	5.60%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-4.842e-01	1.0000	64.0	2.66%	70.0	2.80%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-4.816e-01	1.0000	12.0	0.50%	13.9	0.55%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-4.688e-01	1.0000	11.0	0.46%	12.5	0.50%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-4.654e-01	1.0000	45.0	1.87%	49.5	1.98%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-4.624e-01	1.0000	58.0	2.41%	63.7	2.55%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-4.606e-01	1.0000	87.0	3.62%	94.7	3.79%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-4.562e-01	1.0000	43.0	1.79%	47.6	1.90%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-4.548e-01	1.0000	10.0	0.42%	11.0	0.44%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-4.500e-01	1.0000	3.0	0.12%	3.5	0.14%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-4.500e-01	1.0000	3.0	0.12%	3.9	0.16%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-4.393e-01	1.0000	9.0	0.37%	10.5	0.42%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-4.332e-01	1.0000	17.0	0.71%	19.6	0.78%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-4.219e-01	1.0000	8.0	0.33%	9.2	0.37%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-4.115e-01	1.0000	24.0	1.00%	27.6	1.10%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-3.986e-01	1.0000	94.0	3.91%	103.2	4.13%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-3.966e-01	1.0000	2.0	0.08%	2.7	0.11%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-3.966e-01	1.0000	2.0	0.08%	2.5	0.10%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-3.966e-01	1.0000	2.0	0.08%	2.7	0.11%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-3.966e-01	1.0000	2.0	0.08%	2.4	0.09%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-3.889e-01	1.0000	13.0	0.54%	15.2	0.61%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-3.874e-01	1.0000	21.0	0.87%	24.1	0.96%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-3.841e-01	1.0000	146.0	6.08%	159.0	6.36%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-3.831e-01	1.0000	51.0	2.12%	57.1	2.29%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-3.793e-01	1.0000	6.0	0.25%	7.2	0.29%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-3.793e-01	1.0000	6.0	0.25%	7.6	0.30%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-3.789e-01	1.0000	74.0	3.08%	82.7	3.31%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-3.731e-01	1.0000	38.0	1.58%	43.1	1.72%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-3.523e-01	1.0000	5.0	0.21%	6.0	0.24%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-3.501e-01	1.0000	17.0	0.71%	20.8	0.83%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-3.196e-01	1.0000	4.0	0.17%	5.7	0.23%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-3.178e-01	1.0000	141.0	5.87%	156.1	6.25%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-3.147e-01	1.0000	46.0	1.91%	53.9	2.16%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-3.064e-01	1.0000	64.0	2.66%	73.3	2.93%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-3.042e-01	1.0000	13.0	0.54%	16.6	0.66%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-2.958e-01	1.0000	42.0	1.75%	49.6	1.98%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-2.909e-01	1.0000	18.0	0.75%	22.9	0.92%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-2.909e-01	1.0000	12.0	0.50%	15.9	0.64%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-2.860e-01	1.0000	113.0	4.70%	127.8	5.11%
SeqBias: GA-repeat	GAGAGAGAGA	1e0	-2.794e-01	1.0000	764.0	31.79%	817.3	32.69%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-2.783e-01	1.0000	3.0	0.12%	4.9	0.20%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-2.704e-01	1.0000	37.0	1.54%	44.9	1.80%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-2.683e-01	1.0000	22.0	0.92%	27.3	1.09%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-2.666e-01	1.0000	6.0	0.25%	8.2	0.33%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-2.650e-01	1.0000	36.0	1.50%	44.0	1.76%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-2.613e-01	1.0000	10.0	0.42%	13.5	0.54%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-2.533e-01	1.0000	50.0	2.08%	59.6	2.39%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-2.404e-01	1.0000	39.0	1.62%	47.4	1.90%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-2.366e-01	1.0000	31.0	1.29%	38.9	1.56%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-2.268e-01	1.0000	8.0	0.33%	11.5	0.46%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-2.192e-01	1.0000	58.0	2.41%	69.6	2.78%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-2.145e-01	1.0000	74.0	3.08%	87.9	3.51%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.967e-01	1.0000	181.0	7.53%	205.8	8.23%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-1.953e-01	1.0000	37.0	1.54%	46.5	1.86%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.916e-01	1.0000	112.0	4.66%	130.3	5.21%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.912e-01	1.0000	66.0	2.75%	79.3	3.17%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.858e-01	1.0000	18.0	0.75%	24.8	0.99%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.855e-01	1.0000	35.0	1.46%	44.5	1.78%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.814e-01	1.0000	13.0	0.54%	18.6	0.74%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.814e-01	1.0000	13.0	0.54%	18.4	0.74%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-1.779e-01	1.0000	54.0	2.25%	66.9	2.68%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.681e-01	1.0000	129.0	5.37%	150.3	6.01%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.675e-01	1.0000	51.0	2.12%	63.9	2.56%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.664e-01	1.0000	181.0	7.53%	207.1	8.29%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.649e-01	1.0000	31.0	1.29%	40.2	1.61%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.620e-01	1.0000	64.0	2.66%	79.0	3.16%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-1.616e-01	1.0000	5.0	0.21%	8.4	0.34%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-1.496e-01	1.0000	46.0	1.91%	58.4	2.33%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.484e-01	1.0000	14.0	0.58%	20.1	0.80%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-1.464e-01	1.0000	7.0	0.29%	11.7	0.47%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-1.432e-01	1.0000	80.0	3.33%	97.7	3.91%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.414e-01	1.0000	32.0	1.33%	42.1	1.68%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-1.372e-01	1.0000	148.0	6.16%	173.7	6.95%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.305e-01	1.0000	143.0	5.95%	168.1	6.72%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.303e-01	1.0000	67.0	2.79%	83.4	3.33%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.278e-01	1.0000	12.0	0.50%	18.7	0.75%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-1.276e-01	1.0000	283.0	11.78%	321.8	12.87%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.234e-01	1.0000	39.0	1.62%	51.8	2.07%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-1.173e-01	1.0000	49.0	2.04%	63.7	2.55%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.101e-01	1.0000	59.0	2.46%	75.3	3.01%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.059e-01	1.0000	100.0	4.16%	122.7	4.91%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.051e-01	1.0000	3.0	0.12%	6.9	0.27%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.047e-01	1.0000	70.0	2.91%	88.2	3.53%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-9.719e-02	1.0000	181.0	7.53%	213.1	8.52%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-9.444e-02	1.0000	9.0	0.37%	15.7	0.63%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-9.230e-02	1.0000	41.0	1.71%	55.4	2.21%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-9.208e-02	1.0000	31.0	1.29%	44.0	1.76%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-8.963e-02	1.0000	18.0	0.75%	27.8	1.11%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-8.808e-02	1.0000	30.0	1.25%	42.2	1.69%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-8.692e-02	1.0000	6.0	0.25%	11.4	0.45%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-8.377e-02	1.0000	2232.0	92.88%	2346.8	93.87%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-7.680e-02	1.0000	10.0	0.42%	17.1	0.68%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-7.662e-02	1.0000	46.0	1.91%	62.3	2.49%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-7.648e-02	1.0000	36.0	1.50%	50.2	2.01%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-7.382e-02	1.0000	201.0	8.36%	238.7	9.55%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-6.990e-02	1.0000	1.0	0.04%	3.5	0.14%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-6.990e-02	1.0000	1.0	0.04%	3.6	0.15%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-6.445e-02	1.0000	74.0	3.08%	96.7	3.87%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-6.380e-02	1.0000	3.0	0.12%	7.5	0.30%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-5.834e-02	1.0000	95.0	3.95%	121.5	4.86%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-4.828e-02	1.0000	7.0	0.29%	14.6	0.59%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-4.534e-02	1.0000	96.0	4.00%	124.9	5.00%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-4.390e-02	1.0000	150.0	6.24%	186.2	7.45%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-3.996e-02	1.0000	8.0	0.33%	16.1	0.64%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-3.918e-02	1.0000	10.0	0.42%	19.7	0.79%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-3.914e-02	1.0000	62.0	2.58%	85.9	3.44%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-3.871e-02	1.0000	121.0	5.04%	154.5	6.18%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-3.745e-02	1.0000	12.0	0.50%	22.0	0.88%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-3.500e-02	1.0000	1.0	0.04%	4.7	0.19%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-3.413e-02	1.0000	63.0	2.62%	87.9	3.52%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-3.387e-02	1.0000	377.0	15.69%	440.3	17.61%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-2.781e-02	1.0000	67.0	2.79%	93.9	3.75%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-2.731e-02	1.0000	17.0	0.71%	30.2	1.21%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-2.672e-02	1.0000	52.0	2.16%	75.2	3.01%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-2.577e-02	1.0000	161.0	6.70%	203.8	8.15%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-2.558e-02	1.0000	6.0	0.25%	14.3	0.57%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-2.338e-02	1.0000	27.0	1.12%	44.9	1.80%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-2.155e-02	1.0000	23.0	0.96%	39.2	1.57%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.864e-02	1.0000	14.0	0.58%	27.7	1.11%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.785e-02	1.0000	16.0	0.67%	30.4	1.22%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.775e-02	1.0000	105.0	4.37%	141.6	5.66%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.716e-02	1.0000	36.0	1.50%	57.7	2.31%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.625e-02	1.0000	46.0	1.91%	70.0	2.80%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.360e-02	1.0000	101.0	4.20%	138.4	5.53%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.347e-02	1.0000	3.0	0.12%	10.4	0.42%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.293e-02	1.0000	139.0	5.78%	183.3	7.33%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-1.226e-02	1.0000	175.0	7.28%	225.9	9.04%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.197e-02	1.0000	5.0	0.21%	14.7	0.59%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.107e-02	1.0000	110.0	4.58%	150.0	6.00%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-8.964e-03	1.0000	1.0	0.04%	6.2	0.25%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-8.239e-03	1.0000	8.0	0.33%	20.2	0.81%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-8.168e-03	1.0000	49.0	2.04%	77.4	3.10%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-7.434e-03	1.0000	79.0	3.29%	115.6	4.62%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-6.067e-03	1.0000	173.0	7.20%	228.5	9.14%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-4.563e-03	1.0000	3.0	0.12%	12.7	0.51%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-4.320e-03	1.0000	6.0	0.25%	18.8	0.75%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-4.130e-03	1.0000	10.0	0.42%	25.4	1.02%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-3.856e-03	1.0000	13.0	0.54%	30.2	1.21%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-2.857e-03	1.0000	21.0	0.87%	43.4	1.74%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-2.801e-03	1.0000	15.0	0.62%	34.8	1.39%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-2.164e-03	1.0000	140.0	5.83%	196.4	7.86%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-1.951e-03	1.0000	2227.0	92.68%	2366.0	94.63%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.865e-03	1.0000	48.0	2.00%	82.4	3.30%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.855e-03	1.0000	207.0	8.61%	276.3	11.05%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-1.482e-03	1.0000	71.0	2.95%	113.4	4.54%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.393e-03	1.0000	70.0	2.91%	112.1	4.48%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-1.251e-03	1.0000	22.0	0.92%	47.9	1.91%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.031e-03	1.0000	83.0	3.45%	130.9	5.23%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-6.780e-04	1.0000	339.0	14.11%	435.9	17.43%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-6.340e-04	1.0000	82.0	3.41%	131.1	5.25%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-6.260e-04	1.0000	15.0	0.62%	38.7	1.55%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-4.380e-04	1.0000	148.0	6.16%	215.4	8.61%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-2.700e-04	1.0000	3.0	0.12%	17.7	0.71%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-2.310e-04	1.0000	34.0	1.41%	70.7	2.83%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.510e-04	1.0000	3.0	0.12%	18.9	0.76%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-3.000e-05	1.0000	160.0	6.66%	245.0	9.80%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-1.100e-05	1.0000	257.0	10.69%	367.2	14.69%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-2.000e-06	1.0000	437.0	18.19%	586.7	23.47%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-2.000e-06	1.0000	145.0	6.03%	238.7	9.55%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.000e-06	1.0000	29.0	1.21%	77.1	3.08%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.000e-06	1.0000	3.0	0.12%	26.7	1.07%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-0.000e+00	1.0000	231.0	9.61%	354.8	14.19%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-0.000e+00	1.0000	68.0	2.83%	152.9	6.12%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-0.000e+00	1.0000	0.0	0.00%	2.8	0.11%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-0.000e+00	1.0000	0.0	0.00%	1.8	0.07%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-0.000e+00	1.0000	0.0	0.00%	1.9	0.07%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-0.000e+00	1.0000	0.0	0.00%	1.8	0.07%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-0.000e+00	1.0000	0.0	0.00%	3.5	0.14%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	0.000e+00	1.0000	0.0	0.00%	0.6	0.02%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	1.0	0.04%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	2403.0	100.00%	2500.2	100.00%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	0.000e+00	1.0000	0.0	0.00%	4.3	0.17%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	0.000e+00	1.0000	0.0	0.00%	7.4	0.29%