Information for 8-GAGGTCBGGA (Motif 12)


Reverse Opposite:

p-value:1e-7
log p-value:-1.740e+01
Information Content per bp:1.792
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif1.72%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets42.7 +/- 18.5bp
Average Position of motif in Background15.5 +/- 5.0bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SKN7(MacIsaac)/Yeast

Match Rank:1
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:GAGGTCBGGA
--GGCCCGGA

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GAGGTCBGGA
-AGGCCTNG-

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:3
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GAGGTCBGGA
-AGGCCTAG-

Zfx/MA0146.2/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GAGGTCBGGA----
CAGGCCNNGGCCNN

ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GAGGTCBGGA---
BCNGGTTCTAGANCN

NR2F1/MA0017.2/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GAGGTCBGGA-
CAAAGGTCAAGGG

ECM22/MA0292.1/Jaspar

Match Rank:7
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GAGGTCBGGA-
----TCCGGAN

PB0057.1_Rxra_1/Jaspar

Match Rank:8
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----GAGGTCBGGA--
NTNNNGGGGTCANGNNN

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GAGGTCBGGA
-AGGTCA---

POL011.1_XCPE1/Jaspar

Match Rank:10
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GAGGTCBGGA--
--GGGCGGGACC