Information for 1-CGGGAGGC (Motif 4)


Reverse Opposite:

p-value:1e-10
log p-value:-2.352e+01
Information Content per bp:1.814
Number of Target Sequences with motif71.0
Percentage of Target Sequences with motif4.36%
Number of Background Sequences with motif15.8
Percentage of Background Sequences with motif0.93%
Average Position of motif in Targets39.6 +/- 18.9bp
Average Position of motif in Background31.7 +/- 21.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0110.1_Bcl6b_2/Jaspar

Match Rank:1
Score:0.76
Offset:-5
Orientation:reverse strand
Alignment:-----CGGGAGGC---
NNTNAGGGGCGGNNNN

SP1/MA0079.3/Jaspar

Match Rank:2
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-CGGGAGGC--
GGGGGCGGGGC

PB0167.1_Sox13_2/Jaspar

Match Rank:3
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----CGGGAGGC-----
GTATTGGGTGGGTAATT

KLF5/MA0599.1/Jaspar

Match Rank:4
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:CGGGAGGC--
GGGGNGGGGC

PB0202.1_Zfp410_2/Jaspar

Match Rank:5
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----CGGGAGGC----
NNTNNGGGGCGGNGNGN

Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CGGGAGGC-
-GGGGGGGG

PB0107.1_Ascl2_2/Jaspar

Match Rank:7
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---CGGGAGGC-----
NATNGGGNGGGGANAN

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CGGGAGGC---
TGGGGAAGGGCM

ADR1/Literature(Harbison)/Yeast

Match Rank:9
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CGGGAGGC
-NGGAGG-

ADR1(MacIsaac)/Yeast

Match Rank:10
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CGGGAGGC
-NGGAGG-