Information for 2-CCTCAGCCTCCY (Motif 5)


Reverse Opposite:

p-value:1e-9
log p-value:-2.276e+01
Information Content per bp:1.660
Number of Target Sequences with motif150.0
Percentage of Target Sequences with motif9.22%
Number of Background Sequences with motif65.5
Percentage of Background Sequences with motif3.85%
Average Position of motif in Targets36.6 +/- 19.2bp
Average Position of motif in Background39.2 +/- 21.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SeqBias: GA-repeat

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CCTCAGCCTCCY
TCTCTCTCTC--

ZNF263/MA0528.1/Jaspar

Match Rank:2
Score:0.64
Offset:-7
Orientation:reverse strand
Alignment:-------CCTCAGCCTCCY--
TCCTCCTCCCCCTCCTCCTCC

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CCTCAGCCTCCY
GCTCGGSCTC--

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:4
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCTCAGCCTCCY-
TGCCTGCGYCMCCTT

eor-1/MA0543.1/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CCTCAGCCTCCY-
TCTCTGCGTCTCTNN

ADR1/Literature(Harbison)/Yeast

Match Rank:6
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:CCTCAGCCTCCY
------ACCCCN

ADR1(MacIsaac)/Yeast

Match Rank:7
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:CCTCAGCCTCCY
------ACCCCN

Trl/dmmpmm(Down)/fly

Match Rank:8
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CCTCAGCCTCCY
GCTCTCTCTCTC--

EGR1/MA0162.2/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CCTCAGCCTCCY
CCCCCGCCCCCGCC-

GCR2/MA0305.1/Jaspar

Match Rank:10
Score:0.57
Offset:5
Orientation:forward strand
Alignment:CCTCAGCCTCCY
-----GCTTCCT