Information for 4-GGGTCTGTGG (Motif 7)


Reverse Opposite:

p-value:1e-9
log p-value:-2.133e+01
Information Content per bp:1.791
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif2.27%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets38.8 +/- 18.8bp
Average Position of motif in Background38.6 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MET28/MA0332.1/Jaspar

Match Rank:1
Score:0.75
Offset:4
Orientation:forward strand
Alignment:GGGTCTGTGG
----CTGTGG

MET28(MacIsaac)/Yeast

Match Rank:2
Score:0.75
Offset:4
Orientation:forward strand
Alignment:GGGTCTGTGG
----CTGTGG

RUNX1/MA0002.2/Jaspar

Match Rank:3
Score:0.71
Offset:2
Orientation:forward strand
Alignment:GGGTCTGTGG---
--GTCTGTGGTTT

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:4
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:GGGTCTGTGG----
--NNHTGTGGTTWN

KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GGGTCTGTGG--
GGGGGTGTGTCC

SeqBias: CA-repeat

Match Rank:6
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GGGTCTGTGG
TGTGTGTGTG-

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.66
Offset:3
Orientation:forward strand
Alignment:GGGTCTGTGG---
---GCTGTGGTTT

PB0151.1_Myf6_2/Jaspar

Match Rank:8
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---GGGTCTGTGG--
GGNGCGNCTGTTNNN

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.64
Offset:3
Orientation:forward strand
Alignment:GGGTCTGTGG
---GCTGTG-

AtMYB84(MYB)/Arabidopsis thaliana/AthaMap

Match Rank:10
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GGGTCTGTGG
GGGGGGTAGGTGG