Information for 5-TCAAATATAT (Motif 8)


Reverse Opposite:

p-value:1e-8
log p-value:-1.998e+01
Information Content per bp:1.780
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif2.15%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets34.5 +/- 20.2bp
Average Position of motif in Background28.8 +/- 24.6bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MOT2/MA0379.1/Jaspar

Match Rank:1
Score:0.74
Offset:5
Orientation:reverse strand
Alignment:TCAAATATAT
-----TATAT

Cf2/dmmpmm(Bergman)/fly

Match Rank:2
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:TCAAATATAT
-TATATATAC

CCA1/MA0972.1/Jaspar

Match Rank:3
Score:0.69
Offset:2
Orientation:forward strand
Alignment:TCAAATATAT
--AAATATCT

SPT15/MA0386.1/Jaspar

Match Rank:4
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---TCAAATATAT--------
NNNNAATATATATANCTANNN

PB0080.1_Tbp_1/Jaspar

Match Rank:5
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TCAAATATAT-----
TCTTTATATATAAATA

Cf2/MA0015.1/Jaspar

Match Rank:6
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TCAAATATAT
NTATATATAC

PB0163.1_Six6_2/Jaspar

Match Rank:7
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TCAAATATAT------
ATGGGATATATCCGCCT

bab1/dmmpmm(Bergman)/fly

Match Rank:8
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:TCAAATATAT---
-CAATTATATTTA

NHP6B/MA0346.1/Jaspar

Match Rank:9
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---TCAAATATAT-------
NNNTATTATATATANNNANA

SeqBias: TA-repeat

Match Rank:10
Score:0.66
Offset:1
Orientation:forward strand
Alignment:TCAAATATAT-
-TATATATATA