Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 1628)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 1698)	% of Background Sequences with Motif
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-4	-9.666e+00	0.0245	35.0	2.15%	10.7	0.63%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e-3	-8.050e+00	0.0617	87.0	5.35%	50.3	2.96%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-3	-7.702e+00	0.0617	24.0	1.48%	6.5	0.38%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-3	-7.542e+00	0.0617	47.0	2.89%	21.8	1.28%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-2	-6.480e+00	0.1187	18.0	1.11%	4.9	0.29%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-2	-6.112e+00	0.1430	43.0	2.64%	21.7	1.28%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-2	-5.867e+00	0.1565	13.0	0.80%	2.7	0.16%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e-2	-5.719e+00	0.1587	20.0	1.23%	6.2	0.36%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-2	-5.645e+00	0.1587	72.0	4.43%	45.3	2.67%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-2	-5.617e+00	0.1587	52.0	3.20%	29.7	1.75%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-2	-5.487e+00	0.1587	75.0	4.61%	48.0	2.83%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e-2	-5.282e+00	0.1640	12.0	0.74%	2.2	0.13%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-2	-5.253e+00	0.1640	299.0	18.38%	255.7	15.05%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-2	-5.139e+00	0.1640	44.0	2.70%	24.4	1.44%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-2	-5.012e+00	0.1718	7.0	0.43%	0.0	0.00%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-2	-4.795e+00	0.2001	78.0	4.79%	53.9	3.17%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-2	-4.778e+00	0.2001	31.0	1.91%	15.2	0.89%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-1	-4.534e+00	0.2309	47.0	2.89%	28.9	1.70%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e-1	-4.419e+00	0.2453	14.0	0.86%	4.6	0.27%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-1	-4.336e+00	0.2531	20.0	1.23%	8.4	0.49%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-1	-4.326e+00	0.2531	27.0	1.66%	13.9	0.82%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e-1	-4.141e+00	0.2797	10.0	0.61%	2.9	0.17%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e-1	-3.958e+00	0.3213	73.0	4.49%	52.7	3.10%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-3.931e+00	0.3213	19.0	1.17%	8.4	0.49%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e-1	-3.701e+00	0.3825	117.0	7.19%	93.1	5.48%
SeqBias: CA-repeat	CACACACACA	1e-1	-3.691e+00	0.3825	420.0	25.81%	388.4	22.86%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-1	-3.677e+00	0.3825	14.0	0.86%	5.9	0.34%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-1	-3.667e+00	0.3825	250.0	15.37%	220.6	12.98%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e-1	-3.657e+00	0.3825	304.0	18.68%	273.3	16.08%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-1	-3.589e+00	0.3825	9.0	0.55%	2.5	0.14%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-1	-3.489e+00	0.3825	7.0	0.43%	1.1	0.06%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-1	-3.347e+00	0.4257	46.0	2.83%	31.8	1.87%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-1	-3.072e+00	0.5432	99.0	6.08%	80.3	4.73%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-1	-3.022e+00	0.5545	140.0	8.60%	120.0	7.06%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-1	-3.008e+00	0.5545	28.0	1.72%	17.4	1.02%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-1	-3.005e+00	0.5545	11.0	0.68%	4.1	0.24%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-1	-2.980e+00	0.5545	58.0	3.56%	44.0	2.59%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-1	-2.862e+00	0.5821	4.0	0.25%	0.0	0.00%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e-1	-2.817e+00	0.5821	12.0	0.74%	5.2	0.31%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-1	-2.817e+00	0.5821	12.0	0.74%	5.9	0.35%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e-1	-2.796e+00	0.5821	16.0	0.98%	8.3	0.49%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-1	-2.693e+00	0.6234	127.0	7.81%	109.9	6.47%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-1	-2.693e+00	0.6234	17.0	1.04%	9.3	0.55%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-1	-2.691e+00	0.6234	62.0	3.81%	48.1	2.83%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-1	-2.673e+00	0.6234	43.0	2.64%	31.2	1.84%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-1	-2.669e+00	0.6234	13.0	0.80%	6.2	0.36%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-1	-2.669e+00	0.6234	13.0	0.80%	6.3	0.37%
SeqBias: polyC-repeat	CCCCCCCCCC	1e-1	-2.637e+00	0.6234	1233.0	75.78%	1249.3	73.53%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-1	-2.624e+00	0.6234	23.0	1.41%	14.9	0.88%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-1	-2.600e+00	0.6234	99.0	6.08%	83.2	4.90%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-1	-2.534e+00	0.6234	7.0	0.43%	2.5	0.15%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-1	-2.527e+00	0.6234	19.0	1.17%	11.2	0.66%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-1	-2.527e+00	0.6234	19.0	1.17%	11.8	0.70%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e-1	-2.451e+00	0.6234	53.0	3.26%	41.2	2.42%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-1	-2.448e+00	0.6234	15.0	0.92%	8.3	0.49%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-1	-2.445e+00	0.6234	66.0	4.06%	53.9	3.18%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-1	-2.413e+00	0.6234	11.0	0.68%	5.3	0.31%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-1	-2.399e+00	0.6234	108.0	6.64%	93.3	5.49%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e-1	-2.387e+00	0.6234	71.0	4.36%	58.9	3.47%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-1	-2.320e+00	0.6337	49.0	3.01%	38.1	2.24%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-1	-2.310e+00	0.6337	79.0	4.86%	66.2	3.90%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-1	-2.307e+00	0.6337	39.0	2.40%	29.8	1.76%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-2.296e+00	0.6337	23.0	1.41%	15.9	0.94%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-2.196e+00	0.6621	13.0	0.80%	7.8	0.46%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-2.196e+00	0.6621	13.0	0.80%	7.4	0.44%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-2.146e+00	0.6755	3.0	0.18%	1.0	0.06%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-2.146e+00	0.6755	3.0	0.18%	0.0	0.00%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-2.093e+00	0.7016	68.0	4.18%	57.0	3.36%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-2.082e+00	0.7016	127.0	7.81%	114.3	6.73%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-2.070e+00	0.7016	40.0	2.46%	31.4	1.85%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-2.049e+00	0.7027	15.0	0.92%	9.8	0.58%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-2.042e+00	0.7027	56.0	3.44%	46.9	2.76%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-2.036e+00	0.7027	6.0	0.37%	2.7	0.16%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-2.036e+00	0.7027	6.0	0.37%	2.5	0.14%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-2.036e+00	0.7027	6.0	0.37%	2.5	0.14%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-2.030e+00	0.7027	10.0	0.61%	5.1	0.30%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.991e+00	0.7027	16.0	0.98%	10.0	0.59%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.956e+00	0.7027	48.0	2.95%	39.8	2.34%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-1.948e+00	0.7027	94.0	5.78%	83.7	4.93%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-1.944e+00	0.7027	95.0	5.84%	84.6	4.98%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.938e+00	0.7027	11.0	0.68%	6.3	0.37%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.938e+00	0.7027	11.0	0.68%	6.7	0.39%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.934e+00	0.7027	50.0	3.07%	41.7	2.45%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.907e+00	0.7027	74.0	4.55%	64.9	3.82%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-1.793e+00	0.7575	21.0	1.29%	15.1	0.89%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.767e+00	0.7689	126.0	7.74%	116.1	6.83%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.764e+00	0.7689	406.0	24.95%	399.2	23.50%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-1.760e+00	0.7689	34.0	2.09%	27.2	1.60%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-1.744e+00	0.7689	53.0	3.26%	45.4	2.67%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.744e+00	0.7689	53.0	3.26%	45.1	2.65%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.737e+00	0.7689	54.0	3.32%	46.7	2.75%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.709e+00	0.7689	15.0	0.92%	10.6	0.63%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.709e+00	0.7689	15.0	0.92%	10.6	0.63%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.703e+00	0.7689	244.0	15.00%	235.5	13.86%
SeqBias: GA-repeat	GAGAGAGAGA	1e0	-1.613e+00	0.8120	522.0	32.08%	521.8	30.71%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.589e+00	0.8225	103.0	6.33%	95.9	5.64%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.585e+00	0.8225	55.0	3.38%	48.2	2.84%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.580e+00	0.8225	33.0	2.03%	27.0	1.59%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.576e+00	0.8225	57.0	3.50%	50.2	2.95%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.566e+00	0.8225	5.0	0.31%	2.8	0.16%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.564e+00	0.8225	60.0	3.69%	53.0	3.12%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.563e+00	0.8225	20.0	1.23%	15.1	0.89%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-1.543e+00	0.8225	21.0	1.29%	16.9	0.99%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-1.533e+00	0.8225	210.0	12.91%	203.7	11.99%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.510e+00	0.8225	12.0	0.74%	8.8	0.52%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.500e+00	0.8225	89.0	5.47%	82.5	4.85%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.499e+00	0.8225	165.0	10.14%	158.9	9.35%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-1.497e+00	0.8225	161.0	9.90%	154.2	9.08%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.484e+00	0.8225	46.0	2.83%	40.8	2.40%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.475e+00	0.8225	13.0	0.80%	9.4	0.55%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.458e+00	0.8225	6.0	0.37%	3.8	0.22%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.442e+00	0.8225	188.0	11.56%	182.4	10.74%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-1.430e+00	0.8225	2.0	0.12%	0.0	0.00%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-1.430e+00	0.8225	2.0	0.12%	0.0	0.00%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.420e+00	0.8225	15.0	0.92%	11.3	0.66%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-1.379e+00	0.8326	17.0	1.04%	14.0	0.82%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.379e+00	0.8326	17.0	1.04%	13.1	0.77%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.379e+00	0.8326	37.0	2.27%	32.8	1.93%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-1.364e+00	0.8326	40.0	2.46%	35.4	2.08%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.364e+00	0.8326	40.0	2.46%	35.8	2.11%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.363e+00	0.8326	18.0	1.11%	15.0	0.88%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.360e+00	0.8326	41.0	2.52%	36.1	2.12%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.309e+00	0.8496	115.0	7.07%	110.5	6.50%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-1.290e+00	0.8591	1582.0	97.23%	1645.9	96.87%
SeqBias: TA-repeat	TATATATATA	1e0	-1.227e+00	0.9076	461.0	28.33%	466.8	27.47%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.222e+00	0.9076	175.0	10.76%	172.0	10.12%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.219e+00	0.9076	12.0	0.74%	9.2	0.54%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-1.214e+00	0.9076	99.0	6.08%	95.6	5.63%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.214e+00	0.9076	44.0	2.70%	40.8	2.40%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.203e+00	0.9076	81.0	4.98%	77.2	4.54%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.200e+00	0.9076	69.0	4.24%	65.8	3.87%
SeqBias: CG bias	SSSSSSSSSS	1e0	-1.188e+00	0.9076	464.0	28.52%	471.0	27.72%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-1.175e+00	0.9076	15.0	0.92%	12.1	0.71%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.156e+00	0.9094	17.0	1.04%	14.1	0.83%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.139e+00	0.9175	107.0	6.58%	104.8	6.17%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-1.119e+00	0.9297	88.0	5.41%	85.0	5.00%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.110e+00	0.9312	79.0	4.86%	76.1	4.48%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.099e+00	0.9347	66.0	4.06%	63.2	3.72%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.097e+00	0.9347	32.0	1.97%	29.9	1.76%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.091e+00	0.9347	39.0	2.40%	36.2	2.13%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.090e+00	0.9347	48.0	2.95%	45.1	2.66%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-1.090e+00	0.9347	47.0	2.89%	44.9	2.64%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.080e+00	0.9347	5.0	0.31%	3.5	0.20%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.080e+00	0.9347	5.0	0.31%	3.8	0.22%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-1.049e+00	0.9352	6.0	0.37%	4.8	0.28%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-1.027e+00	0.9425	7.0	0.43%	5.4	0.32%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-1.027e+00	0.9425	7.0	0.43%	5.6	0.33%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.025e+00	0.9425	81.0	4.98%	79.2	4.66%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-1.021e+00	0.9425	78.0	4.79%	76.4	4.50%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-9.909e-01	0.9514	10.0	0.61%	8.7	0.51%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-9.909e-01	0.9514	10.0	0.61%	8.1	0.48%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-9.842e-01	0.9515	104.0	6.39%	103.6	6.10%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-9.783e-01	0.9515	12.0	0.74%	10.8	0.64%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-9.783e-01	0.9515	12.0	0.74%	10.4	0.61%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-9.738e-01	0.9515	13.0	0.80%	11.5	0.68%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-9.738e-01	0.9515	13.0	0.80%	11.5	0.68%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-9.702e-01	0.9515	14.0	0.86%	12.1	0.71%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-9.633e-01	0.9515	17.0	1.04%	15.2	0.89%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-9.595e-01	0.9515	21.0	1.29%	19.2	1.13%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-9.591e-01	0.9515	25.0	1.54%	23.4	1.38%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-9.579e-01	0.9515	128.0	7.87%	128.3	7.55%
Tal1	CATCTG	1e0	-9.497e-01	0.9515	84.0	5.16%	83.1	4.89%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-9.448e-01	0.9515	1323.0	81.32%	1374.5	80.89%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-9.143e-01	0.9515	65.0	4.00%	64.9	3.82%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-8.614e-01	0.9911	40.0	2.46%	39.6	2.33%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-8.470e-01	0.9995	34.0	2.09%	33.9	1.99%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-8.445e-01	0.9995	33.0	2.03%	33.0	1.94%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-8.368e-01	0.9995	30.0	1.84%	29.2	1.72%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-8.260e-01	1.0000	26.0	1.60%	26.0	1.53%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-8.063e-01	1.0000	55.0	3.38%	55.4	3.26%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-7.954e-01	1.0000	16.0	0.98%	15.3	0.90%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-7.807e-01	1.0000	12.0	0.74%	11.4	0.67%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-7.726e-01	1.0000	10.0	0.61%	9.8	0.58%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-7.536e-01	1.0000	6.0	0.37%	5.8	0.34%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-7.479e-01	1.0000	5.0	0.31%	4.6	0.27%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-7.479e-01	1.0000	5.0	0.31%	4.3	0.25%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-7.417e-01	1.0000	4.0	0.25%	3.4	0.20%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-7.346e-01	1.0000	3.0	0.18%	2.0	0.12%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-7.346e-01	1.0000	3.0	0.18%	2.5	0.15%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-7.346e-01	1.0000	3.0	0.18%	2.2	0.13%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-7.334e-01	1.0000	32.0	1.97%	32.2	1.90%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-7.262e-01	1.0000	2.0	0.12%	1.3	0.08%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-7.262e-01	1.0000	2.0	0.12%	1.3	0.08%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-7.262e-01	1.0000	2.0	0.12%	1.1	0.07%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-7.158e-01	1.0000	76.0	4.67%	79.0	4.65%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-7.150e-01	1.0000	1.0	0.06%	0.9	0.06%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-7.150e-01	1.0000	1.0	0.06%	0.9	0.05%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-7.150e-01	1.0000	1.0	0.06%	0.0	0.00%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-7.150e-01	1.0000	1.0	0.06%	0.0	0.00%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-7.150e-01	1.0000	1.0	0.06%	0.9	0.05%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-7.150e-01	1.0000	1.0	0.06%	0.0	0.00%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e0	-6.943e-01	1.0000	227.0	13.95%	236.2	13.90%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-6.876e-01	1.0000	111.0	6.82%	115.4	6.79%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-6.756e-01	1.0000	150.0	9.22%	156.4	9.21%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-6.609e-01	1.0000	58.0	3.56%	60.7	3.57%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-6.585e-01	1.0000	17.0	1.04%	17.5	1.03%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-6.575e-01	1.0000	57.0	3.50%	59.0	3.47%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-6.516e-01	1.0000	16.0	0.98%	16.6	0.98%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-6.516e-01	1.0000	16.0	0.98%	16.7	0.98%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-6.314e-01	1.0000	31.0	1.91%	32.4	1.91%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-6.314e-01	1.0000	31.0	1.91%	32.4	1.91%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-6.283e-01	1.0000	49.0	3.01%	51.7	3.04%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-6.190e-01	1.0000	12.0	0.74%	12.1	0.72%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-6.176e-01	1.0000	65.0	4.00%	68.8	4.05%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-6.156e-01	1.0000	28.0	1.72%	29.4	1.73%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-6.091e-01	1.0000	11.0	0.68%	11.5	0.68%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-5.983e-01	1.0000	10.0	0.61%	10.3	0.60%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-5.607e-01	1.0000	34.0	2.09%	36.4	2.14%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-5.575e-01	1.0000	136.0	8.36%	144.6	8.51%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-5.498e-01	1.0000	32.0	1.97%	34.1	2.01%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-5.482e-01	1.0000	18.0	1.11%	19.5	1.15%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-5.390e-01	1.0000	6.0	0.37%	6.3	0.37%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-5.383e-01	1.0000	30.0	1.84%	32.0	1.89%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-5.364e-01	1.0000	219.0	13.46%	232.8	13.70%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-5.296e-01	1.0000	124.0	7.62%	132.7	7.81%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-5.261e-01	1.0000	28.0	1.72%	30.0	1.77%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-5.261e-01	1.0000	28.0	1.72%	30.6	1.80%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-5.208e-01	1.0000	15.0	0.92%	16.7	0.98%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.170e-01	1.0000	5.0	0.31%	5.1	0.30%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.170e-01	1.0000	5.0	0.31%	5.1	0.30%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-5.170e-01	1.0000	5.0	0.31%	5.3	0.31%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-5.170e-01	1.0000	5.0	0.31%	5.8	0.34%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-5.003e-01	1.0000	65.0	4.00%	70.1	4.13%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-4.992e-01	1.0000	13.0	0.80%	14.9	0.88%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-4.895e-01	1.0000	4.0	0.25%	4.7	0.28%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-4.892e-01	1.0000	62.0	3.81%	67.0	3.94%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-4.872e-01	1.0000	12.0	0.74%	13.1	0.77%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-4.838e-01	1.0000	22.0	1.35%	24.6	1.45%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-4.790e-01	1.0000	33.0	2.03%	36.9	2.17%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-4.756e-01	1.0000	45.0	2.77%	49.1	2.89%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-4.610e-01	1.0000	42.0	2.58%	46.9	2.76%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-4.606e-01	1.0000	30.0	1.84%	33.4	1.97%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-4.597e-01	1.0000	10.0	0.61%	11.9	0.70%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-4.528e-01	1.0000	3.0	0.18%	3.6	0.21%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-4.517e-01	1.0000	109.0	6.70%	118.0	6.94%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-4.490e-01	1.0000	52.0	3.20%	58.0	3.41%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-4.266e-01	1.0000	47.0	2.89%	52.8	3.11%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-4.261e-01	1.0000	8.0	0.49%	9.1	0.53%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-4.184e-01	1.0000	24.0	1.48%	27.6	1.63%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-4.184e-01	1.0000	24.0	1.48%	27.9	1.64%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-4.176e-01	1.0000	57.0	3.50%	63.4	3.73%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-4.114e-01	1.0000	33.0	2.03%	37.4	2.20%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-4.022e-01	1.0000	22.0	1.35%	25.1	1.47%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-4.022e-01	1.0000	22.0	1.35%	25.4	1.49%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-3.987e-01	1.0000	2.0	0.12%	2.4	0.14%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-3.987e-01	1.0000	2.0	0.12%	2.1	0.12%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-3.939e-01	1.0000	13.0	0.80%	15.2	0.90%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-3.827e-01	1.0000	6.0	0.37%	7.3	0.43%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-3.809e-01	1.0000	38.0	2.34%	43.3	2.55%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-3.809e-01	1.0000	38.0	2.34%	43.6	2.56%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-3.753e-01	1.0000	19.0	1.17%	22.9	1.35%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-3.716e-01	1.0000	27.0	1.66%	31.9	1.88%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-3.660e-01	1.0000	11.0	0.68%	13.2	0.78%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-3.660e-01	1.0000	11.0	0.68%	13.7	0.81%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-3.559e-01	1.0000	76.0	4.67%	85.1	5.01%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-3.553e-01	1.0000	5.0	0.31%	6.1	0.36%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-3.445e-01	1.0000	16.0	0.98%	19.5	1.15%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-3.443e-01	1.0000	41.0	2.52%	47.5	2.79%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-3.403e-01	1.0000	50.0	3.07%	57.1	3.36%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-3.347e-01	1.0000	327.0	20.10%	354.7	20.87%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-3.331e-01	1.0000	15.0	0.92%	18.9	1.11%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-3.221e-01	1.0000	4.0	0.25%	5.2	0.31%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-3.211e-01	1.0000	14.0	0.86%	17.8	1.05%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-3.117e-01	1.0000	27.0	1.66%	32.6	1.92%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-3.083e-01	1.0000	13.0	0.80%	16.1	0.95%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-3.074e-01	1.0000	43.0	2.64%	50.7	2.98%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-3.052e-01	1.0000	19.0	1.17%	23.1	1.36%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-3.023e-01	1.0000	1.0	0.06%	1.8	0.11%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-2.947e-01	1.0000	12.0	0.74%	15.6	0.92%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-2.931e-01	1.0000	7.0	0.43%	9.4	0.55%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-2.811e-01	1.0000	1551.0	95.33%	1627.1	95.76%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-2.803e-01	1.0000	3.0	0.18%	4.2	0.25%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-2.801e-01	1.0000	11.0	0.68%	14.4	0.85%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-2.762e-01	1.0000	37.0	2.27%	45.0	2.65%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-2.720e-01	1.0000	53.0	3.26%	63.0	3.71%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-2.693e-01	1.0000	71.0	4.36%	82.1	4.83%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-2.693e-01	1.0000	6.0	0.37%	8.9	0.52%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-2.674e-01	1.0000	124.0	7.62%	140.5	8.27%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-2.557e-01	1.0000	20.0	1.23%	25.8	1.52%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-2.528e-01	1.0000	57.0	3.50%	67.7	3.99%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-2.502e-01	1.0000	116.0	7.13%	132.8	7.82%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-2.458e-01	1.0000	25.0	1.54%	31.2	1.84%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-2.421e-01	1.0000	5.0	0.31%	8.0	0.47%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-2.320e-01	1.0000	60.0	3.69%	71.5	4.21%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-2.248e-01	1.0000	115.0	7.07%	132.4	7.79%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-2.246e-01	1.0000	2.0	0.12%	3.2	0.19%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-2.246e-01	1.0000	2.0	0.12%	3.2	0.19%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-2.246e-01	1.0000	2.0	0.12%	3.6	0.21%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-2.246e-01	1.0000	2.0	0.12%	3.2	0.19%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-2.197e-01	1.0000	134.0	8.24%	153.1	9.01%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-2.125e-01	1.0000	11.0	0.68%	15.1	0.89%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-2.111e-01	1.0000	89.0	5.47%	104.9	6.18%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-2.095e-01	1.0000	7.0	0.43%	10.4	0.61%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-2.095e-01	1.0000	7.0	0.43%	10.3	0.61%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-2.095e-01	1.0000	7.0	0.43%	10.3	0.60%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-2.063e-01	1.0000	20.0	1.23%	26.2	1.54%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-2.035e-01	1.0000	77.0	4.73%	91.1	5.36%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-1.962e-01	1.0000	30.0	1.84%	38.4	2.26%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-1.896e-01	1.0000	1550.0	95.27%	1629.2	95.88%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-1.853e-01	1.0000	1510.0	92.81%	1590.1	93.58%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.841e-01	1.0000	13.0	0.80%	18.2	1.07%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-1.820e-01	1.0000	124.0	7.62%	144.4	8.50%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.798e-01	1.0000	17.0	1.04%	23.3	1.37%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.722e-01	1.0000	12.0	0.74%	17.2	1.01%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.668e-01	1.0000	72.0	4.43%	87.1	5.13%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.602e-01	1.0000	62.0	3.81%	76.7	4.52%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.541e-01	1.0000	118.0	7.25%	139.9	8.23%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.489e-01	1.0000	115.0	7.07%	136.1	8.01%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.481e-01	1.0000	7.0	0.43%	11.0	0.65%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.460e-01	1.0000	27.0	1.66%	36.4	2.14%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-1.456e-01	1.0000	44.0	2.70%	56.5	3.32%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.451e-01	1.0000	141.0	8.67%	165.5	9.74%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.429e-01	1.0000	1.0	0.06%	2.3	0.13%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-1.429e-01	1.0000	1.0	0.06%	2.1	0.12%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.429e-01	1.0000	1.0	0.06%	2.3	0.13%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.411e-01	1.0000	17.0	1.04%	24.4	1.43%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.316e-01	1.0000	20.0	1.23%	28.3	1.66%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.274e-01	1.0000	2.0	0.12%	4.4	0.26%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-1.274e-01	1.0000	2.0	0.12%	4.3	0.25%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.267e-01	1.0000	198.0	12.17%	229.8	13.53%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.253e-01	1.0000	342.0	21.02%	385.8	22.71%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.090e-01	1.0000	5.0	0.31%	9.6	0.56%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.069e-01	1.0000	169.0	10.39%	199.1	11.72%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.061e-01	1.0000	3.0	0.18%	6.8	0.40%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.036e-01	1.0000	7.0	0.43%	12.4	0.73%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-9.805e-02	1.0000	109.0	6.70%	133.5	7.86%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-9.624e-02	1.0000	47.0	2.89%	62.9	3.70%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-8.997e-02	1.0000	30.0	1.84%	42.3	2.49%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-8.965e-02	1.0000	127.0	7.81%	154.9	9.11%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-8.803e-02	1.0000	6.0	0.37%	11.9	0.70%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-8.736e-02	1.0000	4.0	0.25%	8.6	0.51%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-8.386e-02	1.0000	8.0	0.49%	14.8	0.87%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-7.895e-02	1.0000	151.0	9.28%	182.7	10.75%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-7.287e-02	1.0000	22.0	1.35%	33.9	1.99%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-7.039e-02	1.0000	1.0	0.06%	4.0	0.24%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-7.039e-02	1.0000	1.0	0.06%	3.1	0.18%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-6.447e-02	1.0000	3.0	0.18%	7.1	0.42%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-6.343e-02	1.0000	20.0	1.23%	31.8	1.87%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-6.051e-02	1.0000	291.0	17.89%	339.6	19.99%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-5.897e-02	1.0000	13.0	0.80%	22.6	1.33%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-5.537e-02	1.0000	4.0	0.25%	9.1	0.53%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-5.405e-02	1.0000	18.0	1.11%	29.7	1.75%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-5.137e-02	1.0000	24.0	1.48%	37.3	2.20%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-4.994e-02	1.0000	31.0	1.91%	46.1	2.71%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-4.937e-02	1.0000	27.0	1.66%	42.0	2.47%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-4.688e-02	1.0000	5.0	0.31%	11.4	0.67%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-4.296e-02	1.0000	133.0	8.17%	167.3	9.85%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-4.240e-02	1.0000	32.0	1.97%	48.7	2.86%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-4.080e-02	1.0000	2.0	0.12%	6.1	0.36%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-3.530e-02	1.0000	1.0	0.06%	4.7	0.27%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-3.530e-02	1.0000	1.0	0.06%	4.3	0.25%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-3.437e-02	1.0000	53.0	3.26%	75.8	4.46%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-2.838e-02	1.0000	67.0	4.12%	93.2	5.49%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-2.789e-02	1.0000	82.0	5.04%	111.2	6.55%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-2.321e-02	1.0000	18.0	1.11%	32.6	1.92%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-2.290e-02	1.0000	2.0	0.12%	7.9	0.46%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-2.151e-02	1.0000	4.0	0.25%	11.0	0.65%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.858e-02	1.0000	171.0	10.51%	217.3	12.79%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-1.762e-02	1.0000	78.0	4.79%	109.4	6.44%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-1.355e-02	1.0000	21.0	1.29%	38.8	2.29%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.277e-02	1.0000	2.0	0.12%	8.5	0.50%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.160e-02	1.0000	51.0	3.13%	78.2	4.60%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.111e-02	1.0000	17.0	1.04%	33.8	1.99%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-7.749e-03	1.0000	89.0	5.47%	127.2	7.48%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-2.544e-03	1.0000	62.0	3.81%	99.0	5.83%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-0.000e+00	1.0000	0.0	0.00%	2.7	0.16%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	0.000e+00	1.0000	0.0	0.00%	0.9	0.05%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	1627.0	100.00%	1699.2	100.00%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	0.8	0.05%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	1.0	0.06%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.7	0.04%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	1.4	0.08%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	0.000e+00	1.0000	0.0	0.00%	1.2	0.07%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	1.3	0.08%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	0.000e+00	1.0000	0.0	0.00%	1.4	0.08%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	0.000e+00	1.0000	0.0	0.00%	1.9	0.11%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	0.000e+00	1.0000	0.0	0.00%	7.3	0.43%