Information for 9-GGTGACGG (Motif 13)


Reverse Opposite:

p-value:1e-8
log p-value:-2.038e+01
Information Content per bp:1.608
Number of Target Sequences with motif78.0
Percentage of Target Sequences with motif8.68%
Number of Background Sequences with motif19.5
Percentage of Background Sequences with motif2.31%
Average Position of motif in Targets36.9 +/- 20.5bp
Average Position of motif in Background40.3 +/- 24.1bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HVH21(HD-KNOTTED)/Hordeum vulgare/AthaMap

Match Rank:1
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--GGTGACGG--
CATGTGACAGGT

TGA1/MA0588.1/Jaspar

Match Rank:2
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GGTGACGG--
TGGTGACGTAA

RPN4/MA0373.1/Jaspar

Match Rank:3
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GGTGACGG
GGTGGCG-

TGA1(bZIP)/Arabidopsis thaliana/AthaMap

Match Rank:4
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GGTGACGG--
TTGATGACGTTA

hth/MA0227.1/Jaspar

Match Rank:5
Score:0.68
Offset:2
Orientation:forward strand
Alignment:GGTGACGG
--TGACAG

LEU3/MA0324.1/Jaspar

Match Rank:6
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GGTGACGG
CCGGTAACGG

PB0117.1_Eomes_2/Jaspar

Match Rank:7
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----GGTGACGG---
GCGGAGGTGTCGCCTC

Atf3/MA0605.1/Jaspar

Match Rank:8
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GGTGACGG
GATGACGT

Hth/dmmpmm(Noyes_hd)/fly

Match Rank:9
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GGTGACGG-
CTNTGACAGN

TGA7/MA1070.1/Jaspar

Match Rank:10
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GGTGACGG--
GGTGACGTCA