Information for 6-CGCCACTGTACT (Motif 15)


Reverse Opposite:

p-value:1e-8
log p-value:-1.858e+01
Information Content per bp:1.750
Number of Target Sequences with motif44.0
Percentage of Target Sequences with motif4.89%
Number of Background Sequences with motif5.1
Percentage of Background Sequences with motif0.60%
Average Position of motif in Targets40.7 +/- 15.5bp
Average Position of motif in Background27.0 +/- 3.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox6/MA0515.1/Jaspar

Match Rank:1
Score:0.72
Offset:2
Orientation:forward strand
Alignment:CGCCACTGTACT
--CCATTGTTTT

PB0051.1_Osr2_1/Jaspar

Match Rank:2
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---CGCCACTGTACT-
CNNNGCTACTGTANNN

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:3
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CGCCACTGTACT
-NCCATTGTTY-

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CGCCACTGTACT
-NCCATTGTTC-

PB0050.1_Osr1_1/Jaspar

Match Rank:5
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---CGCCACTGTACT-
TNNTGCTACTGTNNNN

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:6
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CGCCACTGTACT
--CCWTTGTYYB

PB0091.1_Zbtb3_1/Jaspar

Match Rank:7
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CGCCACTGTACT---
AATCGCACTGCATTCCG

SOX9/MA0077.1/Jaspar

Match Rank:8
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CGCCACTGTACT
--CCATTGTTC-

Sox2/MA0143.3/Jaspar

Match Rank:9
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CGCCACTGTACT
--CCTTTGTT--

D/MA0445.1/Jaspar

Match Rank:10
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CGCCACTGTACT
-TCCATTGTTCT