Information for 12-AGGACGGA (Motif 17)


Reverse Opposite:

p-value:1e-5
log p-value:-1.277e+01
Information Content per bp:1.479
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif4.00%
Number of Background Sequences with motif6.5
Percentage of Background Sequences with motif0.77%
Average Position of motif in Targets32.2 +/- 18.3bp
Average Position of motif in Background36.3 +/- 10.5bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ZmHOX2a(1)(HD-HOX)/Zea mays/AthaMap

Match Rank:1
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--AGGACGGA
TTAGGAC---

ttk/dmmpmm(Bigfoot)/fly

Match Rank:2
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-AGGACGGA
CAGGACC--

E2F6/MA0471.1/Jaspar

Match Rank:3
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AGGACGGA---
GGGCGGGAAGG

ttk/dmmpmm(SeSiMCMC)/fly

Match Rank:4
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGGACGGA
GCAGGACC--

ttk/dmmpmm(Papatsenko)/fly

Match Rank:5
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AGGACGGA
GCCAGGACC--

Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)

Match Rank:6
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---AGGACGGA-
NDCAGGAARTNN

GCR2/MA0305.1/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AGGACGGA
NGGAAGC-

Eip74EF/dmmpmm(SeSiMCMC)/fly

Match Rank:8
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AGGACGGA-
AGGAAGTAT

GCR2(MacIsaac)/Yeast

Match Rank:9
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AGGACGGA
NGGAAGC-

Unknown4/Arabidopsis-Promoters/Homer

Match Rank:10
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AGGACGGA-
RAAGAMGAMG