Information for 2-ATTCTYCTGCCT (Motif 2)


Reverse Opposite:

p-value:1e-18
log p-value:-4.291e+01
Information Content per bp:1.769
Number of Target Sequences with motif98.0
Percentage of Target Sequences with motif10.90%
Number of Background Sequences with motif10.8
Percentage of Background Sequences with motif1.27%
Average Position of motif in Targets36.3 +/- 14.4bp
Average Position of motif in Background42.2 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MOT3/Literature(Harbison)/Yeast

Match Rank:1
Score:0.65
Offset:7
Orientation:reverse strand
Alignment:ATTCTYCTGCCT-
-------TACCTN

MOT3(MacIsaac)/Yeast

Match Rank:2
Score:0.65
Offset:7
Orientation:reverse strand
Alignment:ATTCTYCTGCCT-
-------TACCTN

MOT3/MA0340.1/Jaspar

Match Rank:3
Score:0.65
Offset:7
Orientation:reverse strand
Alignment:ATTCTYCTGCCT-
-------TACCTN

Tag/dmmpmm(Papatsenko)/fly

Match Rank:4
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:ATTCTYCTGCCT-
------CTACCTG

ttk/MA0460.1/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:ATTCTYCTGCCT
ATTATCCTT---

Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer

Match Rank:6
Score:0.58
Offset:4
Orientation:forward strand
Alignment:ATTCTYCTGCCT--
----KBCTACCTGW

CUP2/MA0287.1/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--ATTCTYCTGCCT
CATTTCTGCTG---

Trl/dmmpmm(Bigfoot)/fly

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:ATTCTYCTGCCT--
-TTNCTCTCTCTCT

ttk/dmmpmm(Noyes)/fly

Match Rank:9
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----ATTCTYCTGCCT
TTNGATTATCCTTG--

PHD1(MacIsaac)/Yeast

Match Rank:10
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:ATTCTYCTGCCT
------GTGCCT