Information for 2-GMAGAGAH (Motif 3)


Reverse Opposite:

p-value:1e-17
log p-value:-3.942e+01
Information Content per bp:1.687
Number of Target Sequences with motif364.0
Percentage of Target Sequences with motif40.49%
Number of Background Sequences with motif183.0
Percentage of Background Sequences with motif21.66%
Average Position of motif in Targets38.5 +/- 20.1bp
Average Position of motif in Background35.7 +/- 22.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PDR8/MA0354.1/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GMAGAGAH
ACGGAGAT

ARR2/MA0949.1/Jaspar

Match Rank:2
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:GMAGAGAH----
--NAAGATTCGN

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:3
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GMAGAGAH--
GCAGTGATTT

ARR10/MA0121.1/Jaspar

Match Rank:4
Score:0.67
Offset:4
Orientation:forward strand
Alignment:GMAGAGAH----
----AGATCCGC

AZF1/MA0277.1/Jaspar

Match Rank:5
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GMAGAGAH-
AAAAAGAAA

ARR10(GARP)/Arabidopsis thaliana/AthaMap

Match Rank:6
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GMAGAGAH----
GCGAAGATCCGC

PB0139.1_Irf5_2/Jaspar

Match Rank:7
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GMAGAGAH----
TTGACCGAGAATTCC

PB0138.1_Irf4_2/Jaspar

Match Rank:8
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---GMAGAGAH----
GNNACCGAGAATNNN

ARR1/MA0945.1/Jaspar

Match Rank:9
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:GMAGAGAH-----
---NAGATTCGNT

ECM23/MA0293.1/Jaspar

Match Rank:10
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GMAGAGAH-----
--AAAGATCTAAA