Information for 3-AACYCRGGAGGC (Motif 5)


Reverse Opposite:

p-value:1e-15
log p-value:-3.462e+01
Information Content per bp:1.744
Number of Target Sequences with motif116.0
Percentage of Target Sequences with motif12.90%
Number of Background Sequences with motif24.0
Percentage of Background Sequences with motif2.84%
Average Position of motif in Targets35.0 +/- 21.1bp
Average Position of motif in Background43.4 +/- 22.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ADR1/Literature(Harbison)/Yeast

Match Rank:1
Score:0.67
Offset:5
Orientation:forward strand
Alignment:AACYCRGGAGGC
-----NGGAGG-

ADR1(MacIsaac)/Yeast

Match Rank:2
Score:0.67
Offset:5
Orientation:forward strand
Alignment:AACYCRGGAGGC
-----NGGAGG-

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.65
Offset:2
Orientation:forward strand
Alignment:AACYCRGGAGGC--
--CACAGCAGGGGG

PUT3/MA0358.1/Jaspar

Match Rank:4
Score:0.64
Offset:2
Orientation:forward strand
Alignment:AACYCRGGAGGC
--CCCGGGAA--

ELF1/MA0473.2/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AACYCRGGAGGC
AACCCGGAAGTG

ELF4/MA0641.1/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AACYCRGGAGGC
AACCCGGAAGTG

GSM1/MA0308.1/Jaspar

Match Rank:7
Score:0.63
Offset:-7
Orientation:forward strand
Alignment:-------AACYCRGGAGGC--
ATTAAAAAACTCCGGAGTATA

PB0205.1_Zic1_2/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AACYCRGGAGGC--
CCACACAGCAGGAGA

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AACYCRGGAGGC--
CCACACAGCAGGAGA

ELF3/MA0640.1/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AACYCRGGAGGC-
AACCCGGAAGTAA