Information for 4-CAGCCTGG (Motif 6)


Reverse Opposite:

p-value:1e-14
log p-value:-3.286e+01
Information Content per bp:1.848
Number of Target Sequences with motif132.0
Percentage of Target Sequences with motif14.68%
Number of Background Sequences with motif35.0
Percentage of Background Sequences with motif4.14%
Average Position of motif in Targets38.3 +/- 20.1bp
Average Position of motif in Background43.7 +/- 22.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

YML081W(MacIsaac)/Yeast

Match Rank:1
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--CAGCCTGG
TTCAGACTGG

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CAGCCTGG
CTGTCTGG

CRZ1(MacIsaac)/Yeast

Match Rank:3
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CAGCCTGG
CAGCCAC-

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CAGCCTGG
TWGTCTGV

SWI5/Literature(Harbison)/Yeast

Match Rank:5
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCTGG
CCAGCA---

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CAGCCTGG
DCTCAGCAGG-

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CAGCCTGG
CACAGN----

ACE2/MA0267.1/Jaspar

Match Rank:8
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CAGCCTGG-
--TGCTGGT

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CAGCCTGG
VBSYGTCTGG

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CAGCCTGG---
-WDNCTGGGCA